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Full information on isolate IP31922 (id:9251)

Provenance/primary metadata

id: 9251
isolate: IP31922
species genotypic: pseudotuberculosis
genotype: 16
sender: Cyril Savin, Institut Pasteur, Paris, France
curator: Auto Tagger
update history: 7 updates show details
date entered: 2020-02-17
datestamp: 2020-02-17

Sequence bin

method: Unknown
contigs: 127
total length: 4,605,144 bp
max length: 191,874 bp
mean length: 36,261 bp
N50: 88,634
L50: 19
N90: 34,794
L90: 50
N95: 21,270
L95: 58
%GC: 47.56
Ns: 0
gaps: 0
loci tagged: 1,998

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
Yersinia cgMLST	500	500	100
Y.enterocolitica cgMLST	1727	500	28
Y.pseudotuberculosis cgMLST	1921	1920	99

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Yersinia pseudotuberculosis	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis	100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups Hide groups

Schemes and loci

All loci
- Typing
  - Genus
    - Yersinia cgMLST
    - Species
      - Y.enterocolitica cgMLST
      - Y.pseudotuberculosis cgMLST
- Other schemes
  - Virulence factors

Navigate and select schemes within tree to display allele designations

Tools

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Analysis: