Full information on isolate 2020/00053 (id:9080)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 9080
- isolate
- 2020/00053
- alias
- IP43186
- species genotypic
- pseudotuberculosis
- genotype
- 11
- sender
- Sylvie Brémont, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 8 updates show details
- date entered
- 2020-01-23
- datestamp
- 2020-01-23
Sequence bin
- method
- Illumina
- contigs
- 225
- total length
- 4,836,437 bp
- max length
- 158,678 bp
- mean length
- 21,496 bp
- N50
- 54,044
- L50
- 27
- N90
- 14,104
- L90
- 90
- N95
- 7,968
- L95
- 113
- %GC
- 47.51
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,978
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1910 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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