Full information on isolate IP32006 (id:9054)
Provenance/primary metadata
- id
- 9054
- isolate
- IP32006
- species genotypic
- pseudotuberculosis
- genotype
- 16
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 5 updates show details
- date entered
- 2020-01-20
- datestamp
- 2020-01-20
Sequence bin
- contigs
- 158
- total length
- 4,608,758 bp
- max length
- 153,038 bp
- mean length
- 29,170 bp
- N50
- 58,184
- L50
- 25
- N90
- 19,357
- L90
- 74
- N95
- 11,788
- L95
- 90
- %GC
- 47.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,994
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 499 | 99 | |
| Y.enterocolitica cgMLST | 1727 | 499 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1917 | 99 | |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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