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Full information on isolate IP32641 (id:8851)

Provenance/primary metadata

id: 8851
isolate: IP32641
species genotypic: pseudotuberculosis
genotype: 16
sender: Cyril Savin, Institut Pasteur, Paris, France
curator: Auto Tagger
update history: 7 updates show details
date entered: 2020-01-02
datestamp: 2020-01-02

Sequence bin

method: Illumina
contigs: 145
total length: 4,651,301 bp
max length: 221,292 bp
mean length: 32,078 bp
N50: 66,691
L50: 24
N90: 19,779
L90: 69
N95: 12,669
L95: 83
%GC: 47.66
Ns: 0
gaps: 0
loci tagged: 1,999

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
Yersinia cgMLST	500	500	100
Y.enterocolitica cgMLST	1727	500	28
Y.pseudotuberculosis cgMLST	1921	1921	100

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Yersinia pseudotuberculosis	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis	100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups Hide groups

Schemes and loci

All loci
- Typing
  - Genus
    - Yersinia cgMLST
    - Species
      - Y.enterocolitica cgMLST
      - Y.pseudotuberculosis cgMLST
- Other schemes
  - Virulence factors

Navigate and select schemes within tree to display allele designations

Tools

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Analysis: