Full information on isolate IP32780 (id:7149)
Provenance/primary metadata
- id
- 7149
- isolate
- IP32780
- species phenotypic
- pseudotuberculosis
- serotype
- I
- species genotypic
- pseudotuberculosis
- genotype
- 16
- sender
- Cyril Savin, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2019-10-28
- datestamp
- 2019-10-28
Sequence bin
- method
- Unknown
- contigs
- 150
- total length
- 4,730,755 bp
- max length
- 288,177 bp
- mean length
- 31,539 bp
- N50
- 94,321
- L50
- 17
- N90
- 27,125
- L90
- 55
- N95
- 14,490
- L95
- 67
- %GC
- 47.52
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,040
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1921 | 100 | |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Y.pseudotuberculosis_5-mismatch | Y.pseudotuberculosis cgMLST | Single-linkage | 5 | experimental | 448 (2 isolates) |
| Y.pseudotuberculosis_5-mismatch | Y.pseudotuberculosis cgMLST | Single-linkage | 5 | experimental | 448 (2 isolates) |
Schemes and loci
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