Full information on isolate IP32759 (id:7130)
Provenance/primary metadata
- id
- 7130
- isolate
- IP32759
- species genotypic
- pseudotuberculosis
- genotype
- 16
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 4 updates show details
- date entered
- 2020-02-24
- datestamp
- 2020-07-08
Sequence bin
- contigs
- 240
- total length
- 4,603,115 bp
- max length
- 168,134 bp
- mean length
- 19,180 bp
- N50
- 48,738
- L50
- 29
- N90
- 14,910
- L90
- 92
- N95
- 9,501
- L95
- 112
- %GC
- 47.68
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,996
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1918 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: