Home About Us Contact What's New Register
Home>Organism>Bordetella cgMLST>Isolate information
Help

Full information on isolate ERR212373 (id:960)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
960
isolate
ERR212373
species
B. pertussis
country
Unknown
accession number
ERR212373
sender
Keith Jolley, University of Oxford
curator
Valerie Bouchez, Institut Pasteur, Paris (E-mail: valerie.bouchez@pasteur.fr)
update history
18 updates show details
date entered
2016-09-01
datestamp
2023-06-19

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
360
total length
3,852,382 bp
max length
73,460 bp
mean length
10,702 bp
N50
17,778
L50
71
N90
6,349
L90
218
N95
3,940
L95
254
%GC
67.85
Ns
0
gaps
0
loci tagged
3,382

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50N50 too low (warn threshold: 20,000)
%GC

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: