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Bordetella
© Images : Institut Pasteur/Pierre Gounon © Design : Institut Pasteur

This page provides access to genotypic data for Bordetella isolates based on Multilocus Sequence Typing (MLST) and core genome MLST (cgMLST). See references for more details.

bordetellaMLST@pasteur.fr

Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates & genomes database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
Before contacting the curators, please download and read carefully the files below:
Data Submission Guidelines
Pathogen-specific Quality Criteria
Accepted sequencing technologies
Metadata fields description
Infographic
Template for Bordetella genomes
Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences and Profiles
Isolates
Other Information
BIGSdb manual
Primers used for amplification and sequencing (MLST)
Overlapping loci
Edit on GitLab