Full information on isolate CARE970018BB (id:945)
Projects
Provenance/primary metadata
- id
- 945
- isolate
- CARE970018BB
- aliases
- SAMN02263910; SRR942675
- species
- B. bronchiseptica I-1
- country
- USA
- continent
- North America
- region
- North America
- host
- pig
- accession number
- SRR942675
- sender
- Keith Jolley, University of Oxford
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 21 updates show details
- date entered
- 2016-09-01
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 372
- total length
- 5,233,058 bp
- max length
- 140,858 bp
- mean length
- 14,068 bp
- N50
- 37,656
- L50
- 43
- N90
- 7,901
- L90
- 158
- N95
- 4,687
- L95
- 200
- %GC
- 68.17
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,297
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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