Full information on isolate F2 (id:919)
Projects
Provenance/primary metadata
- id
- 919
- isolate
- F2
- aliases
- SAMN02231450; SRR931891
- duplicate number
- 11
- species
- B. bronchiseptica I-4
- country
- USA
- continent
- North America
- region
- North America
- year
- 2004
- host
- turkey
- accession number
- SRR931891
- comments
- Iowa
- sender
- Keith Jolley, University of Oxford
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 21 updates show details
- date entered
- 2016-09-01
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 356
- total length
- 5,421,099 bp
- max length
- 295,661 bp
- mean length
- 15,228 bp
- N50
- 34,307
- L50
- 47
- N90
- 8,832
- L90
- 164
- N95
- 5,270
- L95
- 203
- %GC
- 68.04
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,256
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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