Full information on isolate MBORD665 (id:911)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
911
isolate
MBORD665
aliases
SAMN02231439; SRR931880
duplicate number
20
species
B. bronchiseptica I-1
country
Unknown
host
guinea pig
accession number
SRR931880
sender
Keith Jolley, University of Oxford
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
21 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
120
total length
5,154,866 bp
max length
344,483 bp
mean length
42,958 bp
N50
117,000
L50
14
N90
35,546
L90
41
N95
20,231
L95
51
%GC
68.26
Ns
0
gaps
0
loci tagged
3,341

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Schemes and loci

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