Full information on isolate MBORD665 (id:911)
Projects
Provenance/primary metadata
- id
- 911
- isolate
- MBORD665
- aliases
- SAMN02231439; SRR931880
- duplicate number
- 20
- species
- B. bronchiseptica I-1
- country
- Unknown
- host
- guinea pig
- accession number
- SRR931880
- sender
- Keith Jolley, University of Oxford
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 21 updates show details
- date entered
- 2016-09-01
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 120
- total length
- 5,154,866 bp
- max length
- 344,483 bp
- mean length
- 42,958 bp
- N50
- 117,000
- L50
- 14
- N90
- 35,546
- L90
- 41
- N95
- 20,231
- L95
- 51
- %GC
- 68.26
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,341
Assembly checks
Check | Status | Warn/fail reason |
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Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
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