Home About Us Contact What's New Register
Home>Organism>Bordetella cgMLST>Isolate information
Help

Full information on isolate MBORD678 (id:909)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
909
isolate
MBORD678
aliases
SAMN02231436; SRR931876
duplicate number
19
species
B. bronchiseptica I-1
country
Unknown
host
guinea pig
accession number
SRR931876
sender
Keith Jolley, University of Oxford
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
18 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
128
total length
5,198,393 bp
max length
375,846 bp
mean length
40,613 bp
N50
99,907
L50
16
N90
28,554
L90
48
N95
21,137
L95
58
%GC
68.23
Ns
0
gaps
0
loci tagged
3,366

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: