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Full information on isolate MBORD762 (id:905)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny: Records for the phylogeny
Public Genomes: public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id: 905
isolate: MBORD762
aliases: SAMN02231431; SRR931871
species: B. bronchiseptica I-1
country: Ireland
continent: Europe
region: Europe
host: guinea pig
accession number: SRR931871
sender: Keith Jolley, University of Oxford
curator: Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history: 17 updates show details
date entered: 2016-09-01
datestamp: 2022-03-31

Publication (1)

Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs: 102
total length: 5,293,791 bp
max length: 282,117 bp
mean length: 51,900 bp
N50: 136,056
L50: 13
N90: 51,853
L90: 37
N95: 32,385
L95: 43
%GC: 68.15
Ns: 0
gaps: 0
loci tagged: 3,376

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Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Schemes and loci

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