Full information on isolate MO221 (id:900)
Projects
Provenance/primary metadata
- id
- 900
- isolate
- MO221
- aliases
- SAMN02231425; SRR931865
- duplicate number
- 15
- species
- B. bronchiseptica I-4
- country
- USA
- continent
- North America
- region
- North America
- host
- human
- accession number
- SRR931865
- sender
- Keith Jolley, University of Oxford
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 23 updates show details
- date entered
- 2016-09-01
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 104
- total length
- 5,244,056 bp
- max length
- 337,441 bp
- mean length
- 50,424 bp
- N50
- 123,563
- L50
- 15
- N90
- 38,980
- L90
- 44
- N95
- 26,488
- L95
- 52
- %GC
- 68.24
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,310
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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