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Full information on isolate MO275 (id:899)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
899
isolate
MO275
aliases
SAMN02231297; SRR931863
duplicate number
13
species
B. bronchiseptica I-4
country
Unknown
host
human
accession number
SRR931863
sender
Keith Jolley, University of Oxford
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
22 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
100
total length
5,026,252 bp
max length
445,168 bp
mean length
50,263 bp
N50
111,025
L50
13
N90
44,181
L90
38
N95
25,865
L95
45
%GC
68.42
Ns
0
gaps
0
loci tagged
3,280

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Schemes and loci

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