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Full information on isolate B0887 (id:859)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
859
isolate
B0887
alias
ERR031101
species
B. pertussis
country
Unknown
accession number
ERR031101
sender
Keith Jolley, University of Oxford
curator
Valerie Bouchez, Institut Pasteur, Paris (E-mail: valerie.bouchez@pasteur.fr)
update history
22 updates show details
date entered
2016-09-01
datestamp
2023-06-19

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
801
total length
3,816,436 bp
max length
48,479 bp
mean length
4,765 bp
N50
8,660
L50
121
N90
2,400
L90
436
N95
1,543
L95
534
%GC
67.82
Ns
0
gaps
0
loci tagged
3,174

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (warn threshold: 500)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Schemes and loci

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