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Full information on isolate H247 (id:605)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
605
isolate
H247
aliases
ERR380643; WTCHG_45803_289
species
B. bronchiseptica I-4
country
USA
continent
North America
region
MN
year
2008
source type
Human
host
human
accession number
ERR380643
comments
from CDC Pertussis lab, isolate name is CDC name, collected via NP swab or NP aspirate
sender
Keith Jolley, University of Oxford
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
18 updates show details
date entered
2016-09-01
datestamp
2022-04-01

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
2,319
total length
4,849,407 bp
max length
28,765 bp
mean length
2,092 bp
N50
3,551
L50
379
N90
946
L90
1,384
N95
629
L95
1,695
%GC
67.90
Ns
0
gaps
0
loci tagged
2,483

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (fail threshold: 1,000)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Schemes and loci

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