Full information on isolate E020 (id:604)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny: Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny: Records for the phylogeny
Public Genomes: public genomes analyzed in Bridel et al 2022
Public-nrdA project: public isolates used to build a phylogeny based on nrdA (BORD004376) locus

id: 604
isolate: E020
aliases: ERR380642; WTCHG_45803_288
species: B. bronchiseptica II
country: USA
continent: North America
region: MO
year: 1974
source type: Human
host: human
accession number: ERR380642
comments: from CDC Pertussis lab, isolate name is CDC name, collected via NP swab or NP aspirate
sender: Keith Jolley, University of Oxford
curator: Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history: 25 updates show details
date entered: 2016-09-01
datestamp: 2022-04-04

Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Check	Status	Warn/fail reason
Number of contigs		too many contigs (fail threshold: 1,000)
Assembly size
Minimum N50		N50 too low (fail threshold: 10,000)
%GC

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