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Full information on isolate E007 (id:603)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
603
isolate
E007
aliases
ERR380641; WTCHG_45803_287
species
B. bronchiseptica I-4
country
USA
continent
North America
region
RI
year
1968
source type
Human
host
human
accession number
ERR380641
comments
from CDC Pertussis lab, isolate name is CDC name, collected via NP swab or NP aspirate
sender
Keith Jolley, University of Oxford
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
19 updates show details
date entered
2016-09-01
datestamp
2022-04-01

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
2,157
total length
4,834,696 bp
max length
33,302 bp
mean length
2,242 bp
N50
3,943
L50
342
N90
1,025
L90
1,263
N95
662
L95
1,555
%GC
68.01
Ns
0
gaps
0
loci tagged
2,545

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (fail threshold: 1,000)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Schemes and loci

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