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Full information on isolate D756 (id:601)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
601
isolate
D756
aliases
ERR380639; WTCHG_45803_285
species
B. bronchiseptica I-1
country
USA
continent
North America
region
MA
year
2000
host
human
accession number
ERR380639
comments
from CDC Pertussis lab, isolate name is CDC name, collected via NP swab or NP aspirate
sender
Keith Jolley, University of Oxford
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
18 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
2,310
total length
4,974,400 bp
max length
39,806 bp
mean length
2,154 bp
N50
3,716
L50
374
N90
981
L90
1,365
N95
653
L95
1,675
%GC
67.77
Ns
0
gaps
0
loci tagged
2,525

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (fail threshold: 1,000)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Schemes and loci

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