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Full information on isolate CS (id:510)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny
Records for the phylogeny
B. pertussis phylogeny
(resistance macrolide = 23S RNA 13)
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
510
isolate
CS
aliases
CP002695; PRJNA158859; PRJNA66287
species
B. pertussis
country
China
continent
Asia
year
1951
host
human
accession number
CP002695
sender
Keith Jolley, University of Oxford
curator
Valerie Bouchez, Institut Pasteur, Paris (E-mail: valerie.bouchez@pasteur.fr)
update history
16 updates show details
date entered
2016-09-01
datestamp
2023-06-19

Publications (2)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
  • Zhang S, Xu Y, Zhou Z, Wang S, Yang R, Wang J, Wang L (2011). Complete genome sequence of Bordetella pertussis CS, a Chinese pertussis vaccine strain. J Bacteriol 193:4017-8

Sequence bin

contigs
1
length
4,124,236 bp
%GC
67.73
Ns
1
gaps
1
loci tagged
3,419

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella pertussis Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella pertussis 100%

Analysis performed: 2023-07-25

Schemes and loci

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