Full information on isolate Tohama I (id:507)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny: Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny: Records for the phylogeny
B. pertussis phylogeny: (resistance macrolide = 23S RNA 13)
Public Genomes: public genomes analyzed in Bridel et al 2022
Public-nrdA project: public isolates used to build a phylogeny based on nrdA (BORD004376) locus

id: 507
isolate: Tohama I
aliases: BX470248; GCF_000195715.1; NC_002929; PRJNA26; PRJNA57617
duplicate number: 105
species: B. pertussis
country: Japan
continent: Asia
year: 1954
host: human
accession number: BX470248
comments: RefStrain (vacc. str.)
sender: Keith Jolley, University of Oxford
curator: Valerie Bouchez, Institut Pasteur, Paris (E-mail: valerie.bouchez@pasteur.fr)
update history: 18 updates show details
date entered: 2016-09-01
datestamp: 2023-06-19

Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeño-Tárraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ (2003). Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet 35:32-40

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Bordetella pertussis	Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella pertussis	100%

Analysis performed: 2023-07-25

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