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Full information on isolate HI4681 (id:313)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
313
isolate
HI4681
alias
GCF_001698185.1
species
B. pseudohinzii
site
lung
disease
cystic fibrosis
country
USA
continent
North America
year
2012
host
mouse
comments
RefStrain (B. pseudohinzii)
sender
Theodore Spilker, Univ. of Michigan
curator
Auto Tagger
update history
16 updates show details
date entered
2013-10-29
datestamp
2021-07-06

Publications (2)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
  • Spilker T, Darrah R, LiPuma JJ (2016). Complete Genome Sequences of Bordetella flabilis, Bordetella bronchialis, and "Bordetella pseudohinzii". Genome Announc 4:

Sequence bin

contigs
2
total length
4,558,891 bp
max length
4,490,371 bp
mean length
2,279,446 bp
N50
4,490,371
L50
1
N90
4,490,371
L90
1
N95
4,490,371
L95
1
%GC
66.52
Ns
0
gaps
0
loci tagged
1,439

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella pseudohinzii Proteobacteria > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella pseudohinzii 100%

Analysis performed: 2022-11-02

Schemes and loci

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Tools

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