Full information on isolate AU7206 (id:310)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
310
isolate
AU7206
aliases
ASM211966v1; GCF_002119665.1; SAMN06767129
species
Genomic species 13
site
sputum
disease
cystic fibrosis
country
USA
continent
North America
year
2004
source type
Human
host
human
comments
Bordetella genogroup 13 complete genome
sender
Theodore Spilker, Univ. of Michigan
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
10 updates show details
date entered
2013-10-29
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
1
length
5,380,929 bp
%GC
67.54
Ns
0
gaps
0
loci tagged
1,225

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella genomosp. 13 Proteobacteria > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella genomosp. 13 100%

Analysis performed: 2022-11-02

Schemes and loci

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Tools

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