Full information on isolate AU6712 (id:309)
Projects
Provenance/primary metadata
- id
- 309
- isolate
- AU6712
- aliases
- ASM226135v1; GCF_002261355.1; SAMN06767128
- species
- Genomic species 12
- site
- sputum
- disease
- cystic fibrosis
- country
- USA
- continent
- North America
- year
- 2004
- source type
- Human
- host
- human
- comments
- Bordetella genogroup 12
- sender
- Theodore Spilker, Univ. of Michigan
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 9 updates show details
- date entered
- 2013-10-29
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 3
- total length
- 4,507,212 bp
- max length
- 1,914,225 bp
- mean length
- 1,502,404 bp
- N50
- 1,434,705
- L50
- 2
- N90
- 1,158,282
- L90
- 3
- N95
- 1,158,282
- L95
- 3
- %GC
- 64.70
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,416
Assembly checks
Check | Status | Warn/fail reason |
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Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
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