Full information on isolate AU16122 (id:306)
Projects
Provenance/primary metadata
- id
- 306
- isolate
- AU16122
- aliases
- ASM226122v1; GCF_002261225.1; SAMN06767138
- species
- Genomic species 10
- site
- sputum
- disease
- cystic fibrosis
- country
- USA
- continent
- North America
- year
- 2008
- source type
- Human
- host
- human
- comments
- Bordetella genogroup 10
- sender
- Theodore Spilker, Univ. of Michigan
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 9 updates show details
- date entered
- 2013-10-29
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 5
- total length
- 7,153,977 bp
- max length
- 3,379,911 bp
- mean length
- 1,430,796 bp
- N50
- 2,162,082
- L50
- 2
- N90
- 1,593,390
- L90
- 3
- N95
- 1,593,390
- L95
- 3
- %GC
- 67.24
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,010
Assembly checks
Check | Status | Warn/fail reason |
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Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
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