Full information on isolate AU18089 (id:299)
Projects
Provenance/primary metadata
- id
- 299
- isolate
- AU18089
- aliases
- ASM226126v1; GCF_002261265.1; SAMN06767141
- species
- Genomic species 7
- site
- sputum
- disease
- cystic fibrosis
- country
- USA
- continent
- North America
- year
- 2009
- source type
- Human
- host
- human
- comments
- Bordetella genogroup 7
- sender
- Theodore Spilker, Univ. of Michigan
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 10 updates show details
- date entered
- 2013-10-29
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 8
- total length
- 4,130,889 bp
- max length
- 1,041,001 bp
- mean length
- 516,362 bp
- N50
- 764,235
- L50
- 3
- N90
- 483,863
- L90
- 5
- N95
- 261,380
- L95
- 6
- %GC
- 65.33
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,377
Assembly checks
Check | Status | Warn/fail reason |
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Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
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