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Full information on isolate AU3139 (id:291)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
291
isolate
AU3139
aliases
ASM226136v1; GCF_002261365.1; SAMN06767127
species
B. bronchiseptica II
site
sputum
disease
cystic fibrosis
country
USA
continent
North America
year
2001
source type
Human
host
human
comments
Bordetella genogroup 6
sender
Theodore Spilker, Univ. of Michigan
curator
Auto Tagger
update history
25 updates show details
date entered
2013-10-29
datestamp
2023-10-19

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
7
total length
5,066,456 bp
max length
2,441,004 bp
mean length
723,780 bp
N50
837,297
L50
2
N90
332,252
L90
5
N95
242,785
L95
6
%GC
68.34
Ns
0
gaps
0
loci tagged
2,581

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella genomosp. 6 Proteobacteria > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella genomosp. 6 100%

Analysis performed: 2022-11-02

Schemes and loci

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