Full information on isolate AU10456 (id:289)
Projects
Provenance/primary metadata
- id
- 289
- isolate
- AU10456
- aliases
- ASM226131v1; GCF_002261315.1; SAMN06767134
- species
- Genomic species 5
- site
- throat
- disease
- cystic fibrosis
- country
- USA
- continent
- North America
- year
- 2005
- source type
- Human
- host
- human
- comments
- Bordetella genogroup 5
- sender
- Theodore Spilker, Univ. of Michigan
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 9 updates show details
- date entered
- 2013-10-29
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 17
- total length
- 5,304,833 bp
- max length
- 966,856 bp
- mean length
- 312,049 bp
- N50
- 592,230
- L50
- 4
- N90
- 149,076
- L90
- 11
- N95
- 118,141
- L95
- 13
- %GC
- 67.28
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,327
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: