Full information on isolate AU14378 (id:287)
Projects
Provenance/primary metadata
- id
- 287
- isolate
- AU14378
- aliases
- ASM226129v1; GCF_002261295.1; SAMN06767136
- species
- Genomic species 4
- site
- sputum
- disease
- cystic fibrosis
- country
- USA
- continent
- North America
- year
- 2007
- source type
- Human
- host
- human
- comments
- Bordetella genogroup 4
- sender
- Theodore Spilker, Univ. of Michigan
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 9 updates show details
- date entered
- 2013-10-29
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 19
- total length
- 5,460,482 bp
- max length
- 823,486 bp
- mean length
- 287,394 bp
- N50
- 675,263
- L50
- 4
- N90
- 154,135
- L90
- 12
- N95
- 103,681
- L95
- 14
- %GC
- 59.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,301
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
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