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Full information on isolate AU17976 (id:284)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
284
isolate
AU17976
aliases
ASM167674v1; GCA_001676745.1; SAMN05257179
species
B. bronchialis
site
sputum
disease
cystic fibrosis
country
USA
continent
North America
year
2009
source type
Unknown
host
human
comments
RefStrain RefSeq,representative
sender
Theodore Spilker, Univ. of Michigan
curator
Auto Tagger
update history
18 updates show details
date entered
2013-10-29
datestamp
2021-09-08

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
1
length
5,966,919 bp
%GC
67.27
Ns
0
gaps
0
loci tagged
1,192

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchialis Proteobacteria > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchialis 100%

Analysis performed: 2022-11-02

Schemes and loci

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