Full information on isolate AU9795 (id:266)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
266
isolate
AU9795
aliases
ASM226143v1; GCF_002261435.1; SAMN06767132
species
Genomic species 1
site
sputum
disease
cystic fibrosis
country
USA
continent
North America
year
2005
source type
Human
host
human
comments
Bordetella genogroup 1
sender
Theodore Spilker, Univ. of Michigan
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
9 updates show details
date entered
2013-10-29
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
7
total length
5,352,560 bp
max length
1,672,465 bp
mean length
764,652 bp
N50
1,339,228
L50
2
N90
393,249
L90
5
N95
364,568
L95
6
%GC
68.88
Ns
0
gaps
0
loci tagged
1,338

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella genomosp. 1 Proteobacteria > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella genomosp. 1 100%

Analysis performed: 2022-11-02

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: