Full information on isolate AU9795 (id:266)
Projects
Provenance/primary metadata
- id
- 266
- isolate
- AU9795
- aliases
- ASM226143v1; GCF_002261435.1; SAMN06767132
- species
- Genomic species 1
- site
- sputum
- disease
- cystic fibrosis
- country
- USA
- continent
- North America
- year
- 2005
- source type
- Human
- host
- human
- comments
- Bordetella genogroup 1
- sender
- Theodore Spilker, Univ. of Michigan
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 9 updates show details
- date entered
- 2013-10-29
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 7
- total length
- 5,352,560 bp
- max length
- 1,672,465 bp
- mean length
- 764,652 bp
- N50
- 1,339,228
- L50
- 2
- N90
- 393,249
- L90
- 5
- N95
- 364,568
- L95
- 6
- %GC
- 68.88
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,338
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: