Full information on isolate LMG 13506T (id:265)
Projects
Provenance/primary metadata
- id
- 265
- isolate
- LMG 13506T
- aliases
- 7642_7#39; ATCC51541T; CCUG34073T; CDCF5101T; CIP104394T; DSM13416T; GCF_900078335.1; NCTC12912T; SAMEA1982609
- species
- B. trematum
- site
- ear
- disease
- other
- country
- Germany
- continent
- Europe
- year
- 1993
- source type
- Human
- host
- human
- comments
- Otitis media
- sender
- Theodore Spilker, Univ. of Michigan
- curator
- Auto Tagger
- update history
- 11 updates show details
- date entered
- 2013-10-29
- datestamp
- 2023-06-09
Publications (2)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
- Vandamme P, Heyndrickx M, Vancanneyt M, Hoste B, De Vos P, Falsen E, Kersters K, Hinz KH (1996). Bordetella trematum sp. nov., isolated from wounds and ear infections in humans, and reassessment of Alcaligenes denitrificans Rüger and Tan 1983. Int J Syst Bacteriol 46:849-58
Sequence bin
- contigs
- 50
- total length
- 4,444,703 bp
- max length
- 470,633 bp
- mean length
- 88,895 bp
- N50
- 304,917
- L50
- 6
- N90
- 88,036
- L90
- 16
- N95
- 59,542
- L95
- 19
- %GC
- 65.61
- Ns
- 1129
- gaps
- 24
- loci tagged
- 1,437
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: