Full information on isolate LMG 13506T (id:265)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
265
isolate
LMG 13506T
aliases
7642_7#39; ATCC51541T; CCUG34073T; CDCF5101T; CIP104394T; DSM13416T; GCF_900078335.1; NCTC12912T; SAMEA1982609
species
B. trematum
site
ear
disease
other
country
Germany
continent
Europe
year
1993
source type
Human
host
human
comments
Otitis media
sender
Theodore Spilker, Univ. of Michigan
curator
Auto Tagger
update history
11 updates show details
date entered
2013-10-29
datestamp
2023-06-09

Publications (2)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
  • Vandamme P, Heyndrickx M, Vancanneyt M, Hoste B, De Vos P, Falsen E, Kersters K, Hinz KH (1996). Bordetella trematum sp. nov., isolated from wounds and ear infections in humans, and reassessment of Alcaligenes denitrificans Rüger and Tan 1983. Int J Syst Bacteriol 46:849-58

Sequence bin

contigs
50
total length
4,444,703 bp
max length
470,633 bp
mean length
88,895 bp
N50
304,917
L50
6
N90
88,036
L90
16
N95
59,542
L95
19
%GC
65.61
Ns
1129
gaps
24
loci tagged
1,437

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella trematum Proteobacteria > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella trematum 100%

Analysis performed: 2022-11-02

Schemes and loci

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