Full information on isolate J49 (id:1083)
Projects
Provenance/primary metadata
- id
- 1083
- isolate
- J49
- aliases
- ASM51884v1; GCA_000518845.1; JAEJ01; PRJNA202366; SAMN02584960
- species
- Genomic species 7
- country
- Unknown
- source type
- Environment
- host
- environment
- other source info
- Aquatic; Soil
- source lab
- DOE Joint Genome Institute
- comments
- Bordetella genogroup 7 NCBI Assembly for BioProject PRJNA202366
- sender
- Keith Jolley, University of Oxford
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 15 updates show details
- date entered
- 2016-09-01
- datestamp
- 2022-03-31
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 67
- total length
- 4,204,974 bp
- max length
- 307,198 bp
- mean length
- 62,761 bp
- N50
- 95,715
- L50
- 13
- N90
- 29,083
- L90
- 40
- N95
- 22,284
- L95
- 48
- %GC
- 65.42
- Ns
- 45
- gaps
- 40
- loci tagged
- 1,393
Assembly checks
Check | Status | Warn/fail reason |
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Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Schemes and loci
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