Full information on isolate J49 (id:1083)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
1083
isolate
J49
aliases
ASM51884v1; GCA_000518845.1; JAEJ01; PRJNA202366; SAMN02584960
species
Genomic species 7
country
Unknown
source type
Environment
host
environment
other source info
Aquatic; Soil
source lab
DOE Joint Genome Institute
comments
Bordetella genogroup 7 NCBI Assembly for BioProject PRJNA202366
sender
Keith Jolley, University of Oxford
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
15 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

contigs
67
total length
4,204,974 bp
max length
307,198 bp
mean length
62,761 bp
N50
95,715
L50
13
N90
29,083
L90
40
N95
22,284
L95
48
%GC
65.42
Ns
45
gaps
40
loci tagged
1,393

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Schemes and loci

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