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Download allele sequences

Virulence factors

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Full name/product Last updated
cnf DNA34Variable: No limits set 8313045CNF2023-04-06
fliZ DNA271Variable: No limits set 510525Flagella (cluster I)2025-04-09
fliG DNA417Variable: No limits set 990993Flagella (cluster I)2025-09-28
fliH DNA452Variable: No limits set 699741Flagella (cluster I)2025-10-06
fliI DNA714Variable: No limits set 13321437Flagella (cluster I)2025-09-28
fliJ DNA219Variable: No limits set 447447Flagella (cluster I)2025-07-08
fliK DNA536Variable: No limits set 12091395Flagella (cluster I)2025-10-06
fliL DNA196Variable: No limits set 471471Flagella (cluster I)2025-03-25
fliM DNA467Variable: No limits set 10021023Flagella (cluster I)2025-09-28
fliN DNA229Variable: No limits set 414417Flagella (cluster I)2025-03-25
fliO DNA146Variable: No limits set 537603Flagella (cluster I)2025-06-15
fliP DNA360Variable: No limits set 687753Flagella (cluster I)2025-05-08
fliA DNA295Variable: No limits set 723723Flagella (cluster I)2025-09-28
fliQ DNA178Variable: No limits set 270270Flagella (cluster I)2025-03-25
fliR DNA538Variable: No limits set 783783Flagella (cluster I)2025-09-28
flgL DNA472Variable: No limits set 969987Flagella (cluster I)2025-06-25
flgK DNA702Variable: No limits set 16561668Flagella (cluster I)2025-10-06
flgJ DNA517Variable: No limits set 924963Flagella (cluster I)2025-10-15
flgI DNA523Variable: No limits set 10771122Flagella (cluster I)2025-09-28
flgH DNA377Variable: No limits set 684732Flagella (cluster I)2025-11-03
flgG DNA503Variable: No limits set 654807Flagella (cluster I)2025-09-28
flgF DNA446Variable: No limits set 756756Flagella (cluster I)2025-09-28
flgE DNA575Variable: No limits set 12541314Flagella (cluster I)2025-10-16
fliB DNA243Variable: No limits set 7201206Flagella (cluster I)2025-07-23
flgD DNA485Variable: No limits set 576693Flagella (cluster I)2025-09-28
flgC DNA266Variable: No limits set 405405Flagella (cluster I)2025-09-28
flgB DNA182Variable: No limits set 414414Flagella (cluster I)2025-05-01
flgA DNA371Variable: No limits set 603759Flagella (cluster I)2025-09-28
flgM DNA192Variable: No limits set 258303Flagella (cluster I)2025-09-28
flgN DNA322Variable: No limits set 435441Flagella (cluster I)2025-08-07
flhE DNA315Variable: No limits set 420423Flagella (cluster I)2025-08-20
flhA DNA919Variable: No limits set 20702088Flagella (cluster I)2025-09-28
flhB DNA544Variable: No limits set 11431161Flagella (cluster I)2025-07-20
flhC DNA215Variable: No limits set 576582Flagella (cluster I)2025-05-01
fliC DNA1010Variable: No limits set 10801152Flagella (cluster I)2025-11-03
flhD DNA146Variable: No limits set 351375Flagella (cluster I)2025-09-28
fliD DNA277Variable: No limits set 13831410Flagella (cluster I)2025-10-19
fliS DNA197Variable: No limits set 390399Flagella (cluster I)2025-09-03
fliT DNA178Variable: No limits set 363363Flagella (cluster I)2025-09-28
fliE DNA242Variable: No limits set 312312Flagella (cluster I)2025-09-28
fliF DNA751Variable: No limits set 16741728Flagella (cluster I)2025-10-15
- DNA26Variable: No limits set 657657icm/dot type IVB locus2025-04-24
- DNA7Variable: No limits set 13141314icm/dot type IVB locus2025-04-24
- DNA5Variable: No limits set 594594icm/dot type IVB locus2025-04-24
- DNA24Variable: No limits set 10471047icm/dot type IVB locus2025-04-24
- DNA1Variable: No limits set 300300icm/dot type IVB locus2016-09-06
- DNA2Variable: No limits set 630630icm/dot type IVB locus2019-10-31
- DNA8Variable: No limits set 11641164icm/dot type IVB locus2025-04-24
- DNA6Variable: No limits set 849849icm/dot type IVB locus2025-04-24
- DNA16Variable: No limits set 456456icm/dot type IVB locus2025-04-24
- DNA6Variable: No limits set 11311131icm/dot type IVB locus2025-04-24
- DNA17Variable: No limits set 492492icm/dot type IVB locus2025-04-03
- DNA1Variable: No limits set 720720icm/dot type IVB locus2016-09-06
- DNA19Variable: No limits set 10861086icm/dot type IVB locus2025-04-24
- DNA32Variable: No limits set 13861389icm/dot type IVB locus2025-04-24
- DNA10Variable: No limits set 687687icm/dot type IVB locus2025-04-24
- DNA18Variable: No limits set 582582icm/dot type IVB locus2025-09-03
- DNA21Variable: No limits set 720720icm/dot type IVB locus2025-04-24
- DNA22Variable: No limits set 11761176icm/dot type IVB locus2025-04-24
- DNA35Variable: No limits set 30963096icm/dot type IVB locus2025-04-24
- DNA30Variable: No limits set 28052808icm/dot type IVB locus2025-04-24
- DNA34Variable: No limits set 25232532icm/dot type IVB locus2025-04-24
- DNA5Variable: No limits set 591591icm/dot type IVB locus2025-04-24
- DNA7Variable: No limits set 885885icm/dot type IVB locus2025-04-24
- DNA16Variable: No limits set 567567icm/dot type IVB locus2025-04-24
- DNA3Variable: No limits set 819819icm/dot type IVB locus2025-04-24
- DNA7Variable: No limits set 924924icm/dot type IVB locus2025-04-24
- DNA15Variable: No limits set 9721032icm/dot type IVB locus2025-04-24
ail DNA47Variable: No limits set 537543Ail2025-03-25
inv DNA667Variable: No limits set 17116872Invasin2025-09-25
psn/fyuA DNA44Variable: No limits set 20192022Yersiniabactin2025-03-25
ybtX DNA48Variable: No limits set 12601281Yersiniabactin2025-03-25
ybtS DNA39Variable: No limits set 13051305Yersiniabactin2025-03-25
ybtE DNA41Variable: No limits set 15781578Yersiniabactin2025-03-25
ybtT DNA21Variable: No limits set 804804Yersiniabactin2025-03-25
ybtU DNA21Variable: No limits set 10981101Yersiniabactin2025-03-25
irp1 DNA153Variable: No limits set 94869510Yersiniabactin2025-07-31
irp2 DNA122Variable: No limits set 60936108Yersiniabactin2025-07-31
ybtA DNA23Variable: No limits set 960960Yersiniabactin2024-02-08
ybtP DNA60Variable: No limits set 17131803Yersiniabactin2025-03-25
ybtQ DNA67Variable: No limits set 17911803Yersiniabactin2025-03-25
psaA DNA83Variable: No limits set 477498Myf/pH6 antigen2025-05-21
yst1C DNA408Variable: No limits set 438543T2SS (Yst1)2025-11-06
yst1L DNA512Variable: No limits set 11701203T2SS (Yst1)2025-11-03
yst1M DNA29Variable: No limits set 495495T2SS (Yst1)2025-03-25
yst1O DNA503Variable: No limits set 786846T2SS (Yst1)2025-11-12
yst1S DNA14Variable: No limits set 402402T2SS (Yst1)2025-03-25
- DNA633Variable: No limits set 19351977T2SS (Yst1)2025-10-19
yst1E DNA481Variable: No limits set 14971506T2SS (Yst1)2025-11-03
yst1F DNA534Variable: No limits set 11971221T2SS (Yst1)2025-10-19
yst1G DNA238Variable: No limits set 447468T2SS (Yst1)2025-11-06
yst1H DNA15Variable: No limits set 570570T2SS (Yst1)2025-03-25
yst1I DNA56Variable: No limits set 363363T2SS (Yst1)2025-04-09
yst1J DNA295Variable: No limits set 594600T2SS (Yst1)2025-11-03
yst1K DNA365Variable: No limits set 9301062T2SS (Yst1)2025-10-09
- DNA264Variable: No limits set 633648TTSS (chromosomally encoded)2025-07-20
- DNA393Variable: No limits set 729750TTSS (chromosomally encoded)2025-09-28
- DNA232Variable: No limits set 579594TTSS (chromosomally encoded)2025-08-25
- DNA56Variable: No limits set 624648TTSS (chromosomally encoded)2024-02-26
- DNA781Variable: No limits set 20402055TTSS (chromosomally encoded)2025-10-15
- DNA457Variable: No limits set 13201374TTSS (chromosomally encoded)2025-11-03
- DNA52Variable: No limits set 375402TTSS (chromosomally encoded)2025-02-05
- DNA116Variable: No limits set 396399TTSS (chromosomally encoded)2025-07-08
- DNA343Variable: No limits set 945963TTSS (chromosomally encoded)2025-09-28
- DNA314Variable: No limits set 645651TTSS (chromosomally encoded)2025-10-06
- DNA149Variable: No limits set 270294TTSS (chromosomally encoded)2025-09-28
- DNA268Variable: No limits set 27752820TTSS (chromosomally encoded)2025-09-03
- DNA311Variable: No limits set 795804TTSS (chromosomally encoded)2025-09-28
- DNA391Variable: No limits set 10651077TTSS (chromosomally encoded)2025-09-28
- DNA554Variable: No limits set 14761500TTSS (chromosomally encoded)2025-09-28
- DNA380Variable: No limits set 11971215TTSS (chromosomally encoded)2025-09-28
- DNA283Variable: No limits set 215222TTSS (chromosomally encoded)2025-09-11
- DNA388Variable: No limits set 708714TTSS (chromosomally encoded)2025-09-28
- DNA104Variable: No limits set 216216TTSS (chromosomally encoded)2025-09-28
- DNA91Variable: No limits set 249279TTSS (chromosomally encoded)2025-03-26
- DNA122Variable: No limits set 249252TTSS (chromosomally encoded)2025-06-04
yopH DNA142Variable: No limits set 14041407TTSS effectors2025-10-09
yopE DNA52Variable: No limits set 585660TTSS effectors2025-10-30
yopT DNA82Variable: No limits set 963969TTSS effectors2025-10-30
yopO/ypkA DNA122Variable: No limits set 21902202TTSS effectors2025-10-02
yopJ/yopP DNA115Variable: No limits set 867867TTSS effectors2025-07-28
yopM DNA327Variable: No limits set 10981590TTSS effectors2025-10-16
yopD DNA49Variable: No limits set 921921TTSS (ysc-yop) secretion apparatus2025-10-02
sycN DNA23Variable: No limits set 372372TTSS (ysc-yop) secretion apparatus2025-08-14
tyeA DNA13Variable: No limits set 279279TTSS (ysc-yop) secretion apparatus2023-07-24
lcrE/yopN DNA68Variable: No limits set 882882TTSS (ysc-yop) secretion apparatus2025-09-18
yscN DNA73Variable: No limits set 13171320TTSS (ysc-yop) secretion apparatus2025-10-16
yscO DNA34Variable: No limits set 459477TTSS (ysc-yop) secretion apparatus2025-04-24
yscP DNA396Variable: No limits set 13621575TTSS (ysc-yop) secretion apparatus2025-10-15
yscQ DNA49Variable: No limits set 924924TTSS (ysc-yop) secretion apparatus2025-07-08
yscR DNA41Variable: No limits set 654654TTSS (ysc-yop) secretion apparatus2025-03-25
yscS DNA12Variable: No limits set 267267TTSS (ysc-yop) secretion apparatus2025-09-15
yscT DNA48Variable: No limits set 786786TTSS (ysc-yop) secretion apparatus2025-10-22
yopB DNA64Variable: No limits set 12061206TTSS (ysc-yop) secretion apparatus2025-08-30
yscU DNA57Variable: No limits set 10621065TTSS (ysc-yop) secretion apparatus2025-09-25
virG/yscW DNA37Variable: No limits set 396399TTSS (ysc-yop) secretion apparatus2025-05-15
virF/lcrF DNA63Variable: No limits set 816816TTSS (ysc-yop) secretion apparatus2025-07-20
yscA DNA24Variable: No limits set 9999TTSS (ysc-yop) secretion apparatus2022-09-26
yscB DNA31Variable: No limits set 414414TTSS (ysc-yop) secretion apparatus2025-03-25
yscC DNA85Variable: No limits set 18241833TTSS (ysc-yop) secretion apparatus2025-11-06
yscD DNA68Variable: No limits set 12541260TTSS (ysc-yop) secretion apparatus2025-03-25
yscE DNA10Variable: No limits set 201204TTSS (ysc-yop) secretion apparatus2023-12-06
yscF DNA11Variable: No limits set 264264TTSS (ysc-yop) secretion apparatus2024-03-21
yscG DNA16Variable: No limits set 348348TTSS (ysc-yop) secretion apparatus2025-03-25
sycD/lcrH DNA21Variable: No limits set 507507TTSS (ysc-yop) secretion apparatus2025-08-14
yopR/yscH/lcrP DNA44Variable: No limits set 498498TTSS (ysc-yop) secretion apparatus2025-09-07
lcrO/yscI DNA21Variable: No limits set 339348TTSS (ysc-yop) secretion apparatus2025-03-25
ylpB/yscJ DNA21Variable: No limits set 735735TTSS (ysc-yop) secretion apparatus2025-07-02
yscK DNA30Variable: No limits set 627630TTSS (ysc-yop) secretion apparatus2025-08-30
yscL DNA33Variable: No limits set 633672TTSS (ysc-yop) secretion apparatus2025-03-25
lcrQ/yscM DNA25Variable: No limits set 348348TTSS (ysc-yop) secretion apparatus2025-03-25
lcrV DNA269Variable: No limits set 9661044TTSS (ysc-yop) secretion apparatus2025-10-06
lcrG DNA23Variable: No limits set 288288TTSS (ysc-yop) secretion apparatus2025-05-08
lcrR DNA31Variable: No limits set 441441TTSS (ysc-yop) secretion apparatus2025-09-15
yscV/lcrD DNA212Variable: No limits set 21122115TTSS (ysc-yop) secretion apparatus2025-08-10
yscY DNA14Variable: No limits set 339345TTSS (ysc-yop) secretion apparatus2025-03-25
yscX DNA15Variable: No limits set 369369TTSS (ysc-yop) secretion apparatus2025-03-25
pilL DNA71Variable: No limits set 9331167Type IV pili2025-05-08
pilV DNA47Variable: No limits set 12781287Type IV pili2025-04-24
pilD DNA7Variable: No limits set 708708Type IV pili2025-04-24
pilW DNA343Variable: No limits set 912996Type IV pili2025-11-06
pilM DNA52Variable: No limits set 414438Type IV pili2025-04-24
pilN DNA83Variable: No limits set 15931719Type IV pili2025-04-24
pilO DNA71Variable: No limits set 13081608Type IV pili2025-04-24
pilP DNA54Variable: No limits set 444537Type IV pili2025-04-24
pilQ DNA115Variable: No limits set 15001554Type IV pili2025-04-24
pilR DNA76Variable: No limits set 10651110Type IV pili2025-04-24
pilS DNA46Variable: No limits set 507588Type IV pili2025-04-24
pilU DNA72Variable: No limits set 669954Type IV pili2025-04-24
yadA DNA126Variable: No limits set 12691380YadA2025-09-25
yplA DNA300Variable: No limits set 963975YplA2025-09-28
ypmA DNA6Variable: No limits set 456456YPM superantigenic toxin2020-01-17
acpY DNA18Variable: No limits set 252252Ysa TTSS2025-03-25
ysaR DNA34Variable: No limits set 666690Ysa TTSS2024-09-02
ysaQ DNA36Variable: No limits set 936942Ysa TTSS2025-03-25
- DNA3Variable: No limits set 10681068Ysa TTSS2016-09-19
- DNA28Variable: No limits set 456456Ysa TTSS2025-03-25
ysaN DNA46Variable: No limits set 12931293Ysa TTSS2025-03-25
ysaK DNA25Variable: No limits set 408408Ysa TTSS2025-03-25
ysaV DNA81Variable: No limits set 20732079Ysa TTSS2025-07-08
ysaW DNA49Variable: No limits set 11101110Ysa TTSS2025-03-25
ysaC DNA43Variable: No limits set 16921695Ysa TTSS2025-03-25
ysaE DNA19Variable: No limits set 681681Ysa TTSS2025-03-25
- DNA23Variable: No limits set 19231971Ysa TTSS2025-07-31
- DNA43Variable: No limits set 12301239Ysa TTSS2025-05-25
- DNA11Variable: No limits set 309309Ysa TTSS2025-03-25
ysaI DNA6Variable: No limits set 303303Ysa TTSS2025-03-25
ysaJ DNA37Variable: No limits set 744744Ysa TTSS2025-03-25
- DNA38Variable: No limits set 546549Ysa TTSS2025-03-25
- DNA8Variable: No limits set 645645Ysa TTSS2025-03-25
- DNA7Variable: No limits set 372372Ysa TTSS2025-03-25
ysaH DNA46Variable: No limits set 477477Ysa TTSS2025-03-25
- DNA20Variable: No limits set 471486Ysa TTSS2025-03-25
- DNA25Variable: No limits set 435435Ysa TTSS2025-03-25
yspD DNA16Variable: No limits set 10471062Ysa TTSS2025-03-25
ysrR DNA64Variable: No limits set 702711Ysa TTSS2025-03-25
ysrS DNA37Variable: No limits set 23642370Ysa TTSS2025-03-25
yspC DNA25Variable: No limits set 13321335Ysa TTSS2025-03-25
yspB DNA20Variable: No limits set 20312040Ysa TTSS2025-03-25
sycB DNA24Variable: No limits set 510510Ysa TTSS2025-03-25
ysaU DNA49Variable: No limits set 11221125Ysa TTSS2025-03-25
ysaT DNA16Variable: No limits set 801801Ysa TTSS2025-03-25
ysaS DNA37Variable: No limits set 270270Ysa TTSS2025-03-25
yaxA (yaxA) DNA437Variable: No limits set 119712362025-11-12
yaxB (yaxB) DNA1Variable: No limits set 103510352016-09-23
ystA/ystB (ystA/ystB) DNA21Variable: No limits set 2162162025-06-29

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