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Virulence factors

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Full name/product Last updated
cnf DNA34Variable: No limits set 8313045CNF2023-04-06
fliZ DNA245Variable: No limits set 510525Flagella (cluster I)2024-03-04
fliG DNA374Variable: No limits set 990993Flagella (cluster I)2024-04-17
fliH DNA417Variable: No limits set 699741Flagella (cluster I)2024-04-02
fliI DNA625Variable: No limits set 13321437Flagella (cluster I)2024-04-28
fliJ DNA200Variable: No limits set 447447Flagella (cluster I)2024-04-22
fliK DNA466Variable: No limits set 12091395Flagella (cluster I)2024-04-22
fliL DNA184Variable: No limits set 471471Flagella (cluster I)2024-04-18
fliM DNA419Variable: No limits set 10021005Flagella (cluster I)2024-04-11
fliN DNA216Variable: No limits set 414417Flagella (cluster I)2024-03-21
fliO DNA127Variable: No limits set 537585Flagella (cluster I)2024-03-20
fliP DNA326Variable: No limits set 687753Flagella (cluster I)2024-04-17
fliA DNA255Variable: No limits set 723723Flagella (cluster I)2024-04-02
fliQ DNA158Variable: No limits set 270270Flagella (cluster I)2024-03-20
fliR DNA475Variable: No limits set 783783Flagella (cluster I)2024-04-28
flgL DNA427Variable: No limits set 981981Flagella (cluster I)2024-04-05
flgK DNA610Variable: No limits set 16561668Flagella (cluster I)2024-04-17
flgJ DNA460Variable: No limits set 924963Flagella (cluster I)2024-04-28
flgI DNA464Variable: No limits set 10771122Flagella (cluster I)2024-04-17
flgH DNA351Variable: No limits set 684732Flagella (cluster I)2024-04-18
flgG DNA387Variable: No limits set 654783Flagella (cluster I)2024-04-25
flgF DNA395Variable: No limits set 756756Flagella (cluster I)2024-04-17
flgE DNA511Variable: No limits set 12541314Flagella (cluster I)2024-04-17
fliB DNA209Variable: No limits set 7201206Flagella (cluster I)2024-04-28
flgD DNA435Variable: No limits set 576693Flagella (cluster I)2024-03-28
flgC DNA232Variable: No limits set 405405Flagella (cluster I)2024-04-18
flgB DNA169Variable: No limits set 414414Flagella (cluster I)2024-03-14
flgA DNA339Variable: No limits set 603759Flagella (cluster I)2024-04-17
flgM DNA171Variable: No limits set 258303Flagella (cluster I)2024-03-20
flgN DNA293Variable: No limits set 435441Flagella (cluster I)2024-04-17
flhE DNA284Variable: No limits set 420423Flagella (cluster I)2024-04-17
flhA DNA802Variable: No limits set 20702088Flagella (cluster I)2024-04-28
flhB DNA481Variable: No limits set 11431161Flagella (cluster I)2024-04-18
flhC DNA189Variable: No limits set 576582Flagella (cluster I)2024-03-29
fliC DNA882Variable: No limits set 10861152Flagella (cluster I)2024-04-25
flhD DNA131Variable: No limits set 351360Flagella (cluster I)2024-03-21
fliD DNA240Variable: No limits set 13831410Flagella (cluster I)2024-04-28
fliS DNA181Variable: No limits set 390399Flagella (cluster I)2024-04-17
fliT DNA170Variable: No limits set 363363Flagella (cluster I)2024-03-20
fliE DNA217Variable: No limits set 312312Flagella (cluster I)2024-03-20
fliF DNA654Variable: No limits set 16741728Flagella (cluster I)2024-04-28
- DNA22Variable: No limits set 657657icm/dot type IVB locus2024-04-17
- DNA6Variable: No limits set 13141314icm/dot type IVB locus2019-11-27
- DNA4Variable: No limits set 594594icm/dot type IVB locus2019-10-31
- DNA17Variable: No limits set 10471047icm/dot type IVB locus2024-04-17
- DNA1Variable: No limits set 300300icm/dot type IVB locus2016-09-06
- DNA2Variable: No limits set 630630icm/dot type IVB locus2019-10-31
- DNA7Variable: No limits set 11641164icm/dot type IVB locus2019-11-27
- DNA5Variable: No limits set 849849icm/dot type IVB locus2019-11-27
- DNA12Variable: No limits set 456456icm/dot type IVB locus2023-06-25
- DNA5Variable: No limits set 11311131icm/dot type IVB locus2020-02-24
- DNA13Variable: No limits set 492492icm/dot type IVB locus2023-01-02
- DNA1Variable: No limits set 720720icm/dot type IVB locus2016-09-06
- DNA16Variable: No limits set 10861086icm/dot type IVB locus2024-04-17
- DNA25Variable: No limits set 13861389icm/dot type IVB locus2024-02-26
- DNA7Variable: No limits set 687687icm/dot type IVB locus2023-01-02
- DNA14Variable: No limits set 582582icm/dot type IVB locus2023-01-02
- DNA18Variable: No limits set 720720icm/dot type IVB locus2024-04-25
- DNA18Variable: No limits set 11761176icm/dot type IVB locus2023-02-09
- DNA26Variable: No limits set 30963096icm/dot type IVB locus2023-07-06
- DNA23Variable: No limits set 28052808icm/dot type IVB locus2024-04-17
- DNA26Variable: No limits set 25232529icm/dot type IVB locus2024-04-17
- DNA4Variable: No limits set 591591icm/dot type IVB locus2019-10-31
- DNA6Variable: No limits set 885885icm/dot type IVB locus2024-02-08
- DNA13Variable: No limits set 567567icm/dot type IVB locus2023-01-02
- DNA2Variable: No limits set 819819icm/dot type IVB locus2016-09-21
- DNA6Variable: No limits set 924924icm/dot type IVB locus2020-02-24
- DNA14Variable: No limits set 9721032icm/dot type IVB locus2024-02-08
ail DNA43Variable: No limits set 537543Ail2024-03-04
inv DNA558Variable: No limits set 17116872Invasin2024-04-28
psn/fyuA DNA41Variable: No limits set 20192022Yersiniabactin2024-02-19
ybtX DNA42Variable: No limits set 12601281Yersiniabactin2022-12-05
ybtS DNA26Variable: No limits set 13051305Yersiniabactin2020-07-17
ybtE DNA27Variable: No limits set 15781578Yersiniabactin2020-07-17
ybtT DNA18Variable: No limits set 804804Yersiniabactin2023-09-14
ybtU DNA20Variable: No limits set 11011101Yersiniabactin2023-09-14
irp1 DNA126Variable: No limits set 94869510Yersiniabactin2024-02-22
irp2 DNA93Variable: No limits set 60996108Yersiniabactin2024-02-28
ybtA DNA23Variable: No limits set 960960Yersiniabactin2024-02-08
ybtP DNA53Variable: No limits set 17131803Yersiniabactin2024-02-22
ybtQ DNA45Variable: No limits set 17911803Yersiniabactin2024-02-08
psaA DNA77Variable: No limits set 477498Myf/pH6 antigen2024-04-11
yst1C DNA313Variable: No limits set 453543T2SS (Yst1)2024-04-25
yst1L DNA414Variable: No limits set 11701203T2SS (Yst1)2024-04-28
yst1M DNA23Variable: No limits set 495495T2SS (Yst1)2024-04-02
yst1O DNA399Variable: No limits set 786846T2SS (Yst1)2024-04-17
yst1S DNA9Variable: No limits set 402402T2SS (Yst1)2024-02-19
- DNA474Variable: No limits set 19351977T2SS (Yst1)2024-04-18
yst1E DNA376Variable: No limits set 14971506T2SS (Yst1)2024-04-17
yst1F DNA420Variable: No limits set 11971221T2SS (Yst1)2024-04-28
yst1G DNA198Variable: No limits set 447468T2SS (Yst1)2024-04-11
yst1H DNA12Variable: No limits set 570570T2SS (Yst1)2024-02-19
yst1I DNA49Variable: No limits set 363363T2SS (Yst1)2023-02-09
yst1J DNA235Variable: No limits set 594600T2SS (Yst1)2024-04-28
yst1K DNA279Variable: No limits set 9301062T2SS (Yst1)2024-04-22
- DNA233Variable: No limits set 633636TTSS (chromosomally encoded)2024-04-05
- DNA349Variable: No limits set 729750TTSS (chromosomally encoded)2024-04-11
- DNA192Variable: No limits set 579594TTSS (chromosomally encoded)2024-04-08
- DNA56Variable: No limits set 624648TTSS (chromosomally encoded)2024-02-26
- DNA677Variable: No limits set 20402055TTSS (chromosomally encoded)2024-04-17
- DNA390Variable: No limits set 13201374TTSS (chromosomally encoded)2024-04-17
- DNA51Variable: No limits set 375402TTSS (chromosomally encoded)2024-03-29
- DNA98Variable: No limits set 396399TTSS (chromosomally encoded)2024-04-18
- DNA291Variable: No limits set 945963TTSS (chromosomally encoded)2024-04-28
- DNA279Variable: No limits set 645651TTSS (chromosomally encoded)2024-03-21
- DNA142Variable: No limits set 270294TTSS (chromosomally encoded)2024-03-21
- DNA241Variable: No limits set 27752820TTSS (chromosomally encoded)2024-04-17
- DNA274Variable: No limits set 795804TTSS (chromosomally encoded)2024-04-17
- DNA345Variable: No limits set 10651077TTSS (chromosomally encoded)2024-04-22
- DNA481Variable: No limits set 14821500TTSS (chromosomally encoded)2024-04-11
- DNA340Variable: No limits set 12001215TTSS (chromosomally encoded)2024-04-17
- DNA253Variable: No limits set 215222TTSS (chromosomally encoded)2024-04-17
- DNA343Variable: No limits set 708714TTSS (chromosomally encoded)2024-04-17
- DNA98Variable: No limits set 216216TTSS (chromosomally encoded)2024-03-20
- DNA79Variable: No limits set 249276TTSS (chromosomally encoded)2024-04-17
- DNA110Variable: No limits set 249252TTSS (chromosomally encoded)2024-03-29
yopH DNA126Variable: No limits set 14041407TTSS effectors2024-03-29
yopE DNA51Variable: No limits set 585660TTSS effectors2024-03-29
yopT DNA73Variable: No limits set 963969TTSS effectors2024-03-14
yopO/ypkA DNA115Variable: No limits set 21902199TTSS effectors2024-04-02
yopJ/yopP DNA106Variable: No limits set 867867TTSS effectors2024-03-29
yopM DNA315Variable: No limits set 10981590TTSS effectors2024-03-28
yopD DNA43Variable: No limits set 921921TTSS (ysc-yop) secretion apparatus2024-03-04
sycN DNA18Variable: No limits set 372372TTSS (ysc-yop) secretion apparatus2023-11-23
tyeA DNA13Variable: No limits set 279279TTSS (ysc-yop) secretion apparatus2023-07-24
lcrE/yopN DNA61Variable: No limits set 882882TTSS (ysc-yop) secretion apparatus2024-02-08
yscN DNA60Variable: No limits set 13171320TTSS (ysc-yop) secretion apparatus2024-03-04
yscO DNA29Variable: No limits set 459477TTSS (ysc-yop) secretion apparatus2023-09-14
yscP DNA374Variable: No limits set 13621575TTSS (ysc-yop) secretion apparatus2024-03-25
yscQ DNA43Variable: No limits set 924924TTSS (ysc-yop) secretion apparatus2024-03-04
yscR DNA40Variable: No limits set 654654TTSS (ysc-yop) secretion apparatus2024-02-01
yscS DNA10Variable: No limits set 267267TTSS (ysc-yop) secretion apparatus2021-09-27
yscT DNA42Variable: No limits set 786786TTSS (ysc-yop) secretion apparatus2024-04-11
yopB DNA56Variable: No limits set 12061206TTSS (ysc-yop) secretion apparatus2024-03-08
yscU DNA51Variable: No limits set 10621065TTSS (ysc-yop) secretion apparatus2024-02-01
virG/yscW DNA34Variable: No limits set 396399TTSS (ysc-yop) secretion apparatus2024-01-31
virF/lcrF DNA57Variable: No limits set 816816TTSS (ysc-yop) secretion apparatus2024-02-29
yscA DNA24Variable: No limits set 9999TTSS (ysc-yop) secretion apparatus2022-09-26
yscB DNA29Variable: No limits set 414414TTSS (ysc-yop) secretion apparatus2022-05-16
yscC DNA73Variable: No limits set 18241833TTSS (ysc-yop) secretion apparatus2024-03-14
yscD DNA62Variable: No limits set 12541260TTSS (ysc-yop) secretion apparatus2024-03-29
yscE DNA10Variable: No limits set 201204TTSS (ysc-yop) secretion apparatus2023-12-06
yscF DNA11Variable: No limits set 264264TTSS (ysc-yop) secretion apparatus2024-03-21
yscG DNA14Variable: No limits set 348348TTSS (ysc-yop) secretion apparatus2023-12-06
sycD/lcrH DNA18Variable: No limits set 507507TTSS (ysc-yop) secretion apparatus2023-04-23
yopR/yscH/lcrP DNA39Variable: No limits set 498498TTSS (ysc-yop) secretion apparatus2024-03-29
lcrO/yscI DNA19Variable: No limits set 339348TTSS (ysc-yop) secretion apparatus2024-02-01
ylpB/yscJ DNA18Variable: No limits set 735735TTSS (ysc-yop) secretion apparatus2022-05-02
yscK DNA22Variable: No limits set 627630TTSS (ysc-yop) secretion apparatus2022-12-12
yscL DNA26Variable: No limits set 633672TTSS (ysc-yop) secretion apparatus2024-02-19
lcrQ/yscM DNA24Variable: No limits set 348348TTSS (ysc-yop) secretion apparatus2024-03-08
lcrV DNA247Variable: No limits set 9661044TTSS (ysc-yop) secretion apparatus2024-03-29
lcrG DNA19Variable: No limits set 288288TTSS (ysc-yop) secretion apparatus2023-04-16
lcrR DNA28Variable: No limits set 441441TTSS (ysc-yop) secretion apparatus2024-03-14
yscV/lcrD DNA203Variable: No limits set 21122115TTSS (ysc-yop) secretion apparatus2024-03-29
yscY DNA12Variable: No limits set 339345TTSS (ysc-yop) secretion apparatus2019-10-29
yscX DNA11Variable: No limits set 369369TTSS (ysc-yop) secretion apparatus2024-02-08
pilL DNA64Variable: No limits set 9331167Type IV pili2024-04-17
pilV DNA42Variable: No limits set 12781287Type IV pili2024-02-01
pilD DNA6Variable: No limits set 708708Type IV pili2019-11-27
pilW DNA303Variable: No limits set 912996Type IV pili2024-04-28
pilM DNA42Variable: No limits set 414438Type IV pili2024-02-01
pilN DNA73Variable: No limits set 15931719Type IV pili2024-04-17
pilO DNA63Variable: No limits set 13081608Type IV pili2024-04-17
pilP DNA44Variable: No limits set 444537Type IV pili2024-04-17
pilQ DNA99Variable: No limits set 15001554Type IV pili2024-04-17
pilR DNA61Variable: No limits set 10651110Type IV pili2024-04-17
pilS DNA38Variable: No limits set 507588Type IV pili2024-04-17
pilU DNA61Variable: No limits set 669954Type IV pili2024-04-17
yadA DNA116Variable: No limits set 12691380YadA2024-02-08
yplA DNA258Variable: No limits set 963975YplA2024-04-18
ypmA DNA6Variable: No limits set 456456YPM superantigenic toxin2020-01-17
acpY DNA12Variable: No limits set 252252Ysa TTSS2024-02-01
ysaR DNA33Variable: No limits set 666690Ysa TTSS2023-10-25
ysaQ DNA28Variable: No limits set 936942Ysa TTSS2024-02-28
- DNA3Variable: No limits set 10681068Ysa TTSS2016-09-19
- DNA24Variable: No limits set 456456Ysa TTSS2023-09-14
ysaN DNA40Variable: No limits set 12931293Ysa TTSS2024-04-17
ysaK DNA21Variable: No limits set 408408Ysa TTSS2023-09-07
ysaV DNA68Variable: No limits set 20732079Ysa TTSS2024-04-17
ysaW DNA41Variable: No limits set 11101110Ysa TTSS2024-03-20
ysaC DNA36Variable: No limits set 16921695Ysa TTSS2024-04-17
ysaE DNA16Variable: No limits set 681681Ysa TTSS2024-04-17
- DNA14Variable: No limits set 19231971Ysa TTSS2024-02-01
- DNA36Variable: No limits set 12301239Ysa TTSS2024-02-28
- DNA10Variable: No limits set 309309Ysa TTSS2024-02-22
ysaI DNA5Variable: No limits set 303303Ysa TTSS2023-09-14
ysaJ DNA31Variable: No limits set 744744Ysa TTSS2023-09-14
- DNA29Variable: No limits set 546549Ysa TTSS2023-09-07
- DNA6Variable: No limits set 645645Ysa TTSS2016-09-19
- DNA5Variable: No limits set 372372Ysa TTSS2017-10-18
ysaH DNA39Variable: No limits set 477477Ysa TTSS2023-09-07
- DNA16Variable: No limits set 471486Ysa TTSS2023-09-07
- DNA20Variable: No limits set 435435Ysa TTSS2023-09-07
yspD DNA10Variable: No limits set 10471062Ysa TTSS2024-02-28
ysrR DNA58Variable: No limits set 702711Ysa TTSS2024-04-11
ysrS DNA28Variable: No limits set 23642370Ysa TTSS2024-04-17
yspC DNA17Variable: No limits set 13321335Ysa TTSS2024-02-22
yspB DNA15Variable: No limits set 20312040Ysa TTSS2024-02-22
sycB DNA20Variable: No limits set 510510Ysa TTSS2023-09-14
ysaU DNA38Variable: No limits set 11221125Ysa TTSS2024-04-17
ysaT DNA8Variable: No limits set 801801Ysa TTSS2023-02-09
ysaS DNA34Variable: No limits set 270270Ysa TTSS2023-10-25
yaxA (yaxA) DNA361Variable: No limits set 119712362024-04-17
yaxB (yaxB) DNA1Variable: No limits set 103510352016-09-23
ystA/ystB (ystA/ystB) DNA15Variable: No limits set 2162162024-03-21

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