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Full information on isolate YEQ64 (id:19292)

Provenance/primary metadata

id: 19292
isolate: YEQ64
species genotypic: enterocolitica
genotype: 1Aa
sender: Minji Jun, Animal and Plant Quarantine Agency
curator: Auto Tagger
update history: 7 updates show details
date entered: 2023-12-06
datestamp: 2023-12-06

Sequence bin

contigs: 44
total length: 4,771,980 bp
max length: 656,255 bp
mean length: 108,455 bp
N50: 244,878
L50: 7
N90: 59,603
L90: 22
N95: 38,200
L95: 27
%GC: 47.07
Ns: 400
gaps: 4
loci tagged: 1,773

Show sequence bin

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
Yersinia cgMLST	500	500	100
Y.enterocolitica cgMLST	1727	1707	98
Y.pseudotuberculosis cgMLST	1921	500	26

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Yersinia enterocolitica	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia enterocolitica	100%

Analysis performed: 2023-12-06

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups Hide groups

Schemes and loci

All loci
- Typing
  - Genus
    - Yersinia cgMLST
    - Species
      - Y.enterocolitica cgMLST
      - Y.pseudotuberculosis cgMLST
- Other schemes
  - Virulence factors

Navigate and select schemes within tree to display allele designations

Tools

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