Full information on isolate YEQ40 (id:19283)
Provenance/primary metadata
- id
- 19283
- isolate
- YEQ40
- species genotypic
- enterocolitica
- genotype
- 1Aa
- sender
- Minji Jun, Animal and Plant Quarantine Agency
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2023-12-06
- datestamp
- 2023-12-06
Sequence bin
- contigs
- 21
- total length
- 4,633,986 bp
- max length
- 828,756 bp
- mean length
- 220,666 bp
- N50
- 495,104
- L50
- 4
- N90
- 157,398
- L90
- 11
- N95
- 150,696
- L95
- 12
- %GC
- 47.16
- Ns
- 200
- gaps
- 2
- loci tagged
- 1,792
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 1725 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 500 | 26 | |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Y.enterocolitica_3-mismatch | Y.enterocolitica cgMLST | Single-linkage | 3 | experimental | 8395 (2 isolates) |
| Y.enterocolitica_5-mismatch | Y.enterocolitica cgMLST | Single-linkage | 5 | experimental | 6106 (2 isolates) |
| Y.enterocolitica_3-mismatch | Y.enterocolitica cgMLST | Single-linkage | 3 | experimental | 8395 (2 isolates) |
| Y.enterocolitica_5-mismatch | Y.enterocolitica cgMLST | Single-linkage | 5 | experimental | 6106 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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