Sequence bin for IP28587

Contig summary statistics

Contigs
190
Total length
4,248,809
Minimum length
220
Maximum length
240,775
Mean length
22,363
N50
55,367
L50
23
N90
15,356
L90
78
N95
8,850
L95
96

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
46288contig_00001240775YPTB2261 5029650799 EMBL GBK
YPTB2263 5277953225
YPTB2266 5486756264
YPTB2273 6155462519
YPTB2274 6250663396
YPTB2275 6339664388
YPTB2283 9200493278
YPTB3313 9611596582
x_4 109818109907
YPTB2312 125191125937
YPTB2322 143263144279
YPTB2323 144371144835
YPTB2324 144979145365
YPTB2064 164310164966
YPTB2060 166826167638
YPTB2059 167642167911
YPTB2053 175031175375
YPTB2047 180805182247
YPTB2045 183467184783
YPTB2042 186591187376
YPTB2038 189977190720
YPTB2032 196546197517
YPTB2023 204762205346
YPTB2019 208900209637
YPTB2009 214987215841
YPTB2008 215959216768
YPTB2007 216765217166
YPTB2005 218027219109
YPTB2001 222526223473
46202contig_00002137870YPTB1358 38654128 EMBL GBK
YPTB1361 57536862
YPTB1362 69858118
YPTB1376 1381714533
YPTB1377 1454515276
YPTB1386 2584327495
YPTB1391 3286434813
YPTB1394 3607138347
YPTB1395 3856738785
YPTB1397 3982741551
YPTB1403 5049851841
YPTB1408 5559157873
YPTB1414 6240763492
YPTB1416 6526265954
YPTB1417 6612367796
YPTB1428 8023781559
YPTB1436 9548996889
YPTB1439 101866102876
YPTB1442 104997107117
YPTB1445 110467112119
YPTB1454 119772120278
46264contig_00003135037YPTB0166 2084421170 EMBL GBK
YPTB0167 2174523004
YPTB0171 2676728029
YPTB0177 3323734322
YPTB0182 4100042124
YPTB0190 4764448468
YPTB0193 5023250948
YPTB0219 8003080302
YPTB0222 8275283420
YPTB0224 8464585502
YPTB0227 8773988665
YPTB0228 8866289948
YPTB0229 8994590712
YPTB0240 100874101719
YPTB0247 105831106784
YPTB0250 110611111372
YPTB0261 121969122751
YPTB0262 122766123788
YPTB0264 124610126130
YPTB0265 126186126887
YPTB0266 127013128176
YPTB0267 128188130377
YPTB0270 132686134137
46307contig_00004129221YPTB1555 37834397 EMBL GBK
YPTB1557 51495886
YPTB1558 58926482
YPTB1559 64827549
x_2 1644116656
YPTB1921 9557896108
46259contig_00005123604YPTB0485 24223306 EMBL GBK
YPTB0483 58396108
YPTB0481 71757585
YPTB0478 1186312321
YPTB0476 1340314743
YPTB0475 1475315586
YPTB0473 1771618345
YPTB0472 1849318786
YPTB0471 1891519391
YPTB0470 1965221100
YPTB0465 2541525672
YPTB0464 2569226003
YPTB0463 2626327234
YPTB0450 5394955280
YPTB0444 6048061100
YPTB0441 6285863310
YPTB0440 6335063577
YPTB0439 6358263902
YPTB0438 6390864300
YPTB0425 7795778262
YPTB0424 7838079321
YPTB0412 9684097574
YPTB0411 9759197983
YPTB0408 99537100103
YPTB0404 103704103997
YPTB0402 105211106647
46174contig_00006118405YPTB1724 3450035984 EMBL GBK
fliZ (fliZ) 4534545854
fliA (fliA) 4590946631
YPTB3320 4590946631
fliT (fliT) 5051550877
fliE (fliE) 5607856389
fliF (fliF) 5673658454
fliG (fliG) 5845159443
YPTB3347 5845159443
fliH (fliH) 5943660158
fliI (fliI) 6015861522
fliJ (fliJ) 6157062016
fliL (fliL) 6356264032
fliM (fliM) 6403865039
fliN (fliN) 6503665452
YPTB3352 6503665452
fliP (fliP) 6599466746
fliQ (fliQ) 6686867137
YPTB3354 6686867137
flgL (flgL) 6798868968
flgJ (flgJ) 7108372045
flgI (flgI) 7204573154
flgH (flgH) 7316673879
flgG (flgG) 7398474766
flgF (flgF) 7479375548
flgE (flgE) 7557076826
flgD (flgD) 7697377662
YPTB3339 7767878082
flgC (flgC) 7767878082
flgB (flgB) 7808878501
YPTB3340 7808878501
flgM (flgM) 7957079869
flgN (flgN) 7991780357
flhE (flhE) 8073081152
YPTB3357 8115283230
flhA (flhA) 8115283230
flhB (flhB) 8323084378
YPTB2396 8462685270
YPTB2397 8528085669
YPTB3319 9588496771
flhC (flhC) 9690997490
flhD (flhD) 9749497853
46342contig_00007112132YPTB3660 10271848 EMBL GBK
YPTB3663 30163489
YPTB3665 47165228
YPTB3668 76349010
YPTB3674 1232712947
YPTB3675 1297813367
YPTB3676 1338413740
YPTB3677 1388814004
YPTB3678 1403815369
YPTB3679 1537715811
YPTB3680 1581515994
YPTB3681 1599716500
YPTB3682 1651516868
YPTB3683 1687817411
YPTB3684 1742617818
YPTB3685 1785218157
YPTB3686 1817118710
YPTB3687 1872519039
YPTB3688 1905019421
YPTB3690 1984120032
YPTB3691 2003220442
YPTB3692 2045521153
YPTB3693 2117121503
YPTB3694 2151821796
YPTB3695 2181122635
YPTB3696 2265222954
YPTB3697 2295123556
YPTB3698 2356724196
YPTB3699 2422924540
YPTB3704 2926329733
YPTB3705 2983030204
YPTB3706 3034230629
YPTB3709 3141932141
YPTB3711 3354133759
YPTB3714 3484436652
YPTB3725 4781248048
YPTB3729 4988650518
YPTB3732 5413154706
YPTB3734 5682657395
YPTB3746 7337874055
YPTB3750 7740077921
YPTB3760 8876089167
YPTB3764 9340094119
46256contig_00008111796YPTB3498 77658418 EMBL GBK
YPTB3503 1736218780
YPTB3506 2025620897
YPTB3508 2170722135
YPTB3510 2380524209
YPTB3518 3043531217
YPTB3523 3492835491
YPTB3524 3547536020
YPTB3525 3602736752
YPTB3526 3681438247
YPTB3527 3827138558
YPTB3528 3871939201
YPTB3531 4091041845
YPTB3533 4252742913
YPTB3536 4581847233
YPTB3538 6157061980
YPTB3547 6926970204
YPTB3548 7021270415
YPTB3549 7076271673
YPTB3558 7206873513
YPTB3561 7831279781
YPTB3563 8037880866
YPTB3565 8195783000
YPTB3570 8861889070
YPTB3574 9161993073
46323contig_0000997567YPTB0842 78959016 EMBL GBK
YPTB0835 1520215750
YPTB0834 1577216020
YPTB0833 1624817609
46206contig_0001092960YPTB2714 2617827146 EMBL GBK
YPTB2715 2760727864
YPTB2716 2791229639
YPTB2761 6003160297
YPTB2775 7208973216
YPTB2779 7695077402
YPTB2781 7855079263
YPTB2785 8202982499
YPTB2789 8261383677
YPTB2794 8823988865
YPTB2797 9104791592
46341contig_0001192411YPTB1166 47995551 EMBL GBK
YPTB1169 74848635
YPTB1172 1108111899
YPTB2602 1753218788
YPTB2601 1880119088
YPTB2600 1913119574
YPTB2597 2366924871
YPTB2595 2527425729
YPTB2594 2583026324
YPTB2585 3656038356
YPTB2581 4313744114
YPTB2580 4412944671
YPTB2578 4522645528
YPTB2577 4552547369
YPTB2558 6591466771
YPTB2557 6677167742
YPTB1253 7627577405
46282contig_0001290478YPTB3042 1317215328 EMBL GBK
YPTB3036 2114021667
YPTB3035 2168023926
YPTB3034 2417425046
YPTB3033 2505325847
YPTB3023 4055241877
YPTB3017 4848849405
YPTB3012 5355154396
YPTB3003 6570866433
YPTB2998 7065871416
YPTB2997 7142672274
YPTB2994 7620876756
YPTB2993 7676077782
YPTB2987 8467185630
46192contig_0001376494YPTB3225 43404612 EMBL GBK
YPTB3222 68317157
YPTB3218 940910539
YPTB3217 1053211125
YPTB3215 1147712031
YPTB3210 1643717321
YPTB3205 2076521472
YPTB3198 2937631370
YPTB3197 3169232708
YPTB3196 3281133974
YPTB3182 4901850115
YPTB3181 5019050576
YPTB3167 5875959658
YPTB3165 6041262145
46267contig_0001474460YPTB2467 51656190 EMBL GBK
YPTB2470 85658801
YPTB2471 89559689
YPTB2474 1163012664
YPTB2475 1269812865
46275contig_0001567603YPTB3914 1960720179 EMBL GBK
YPTB3915 2074121655
YPTB3916 2166523734
YPTB3920 2869429248
YPTB3921 3159531951
x_6 3785938446
46169contig_0001664147YPTB3649 2090522551 EMBL GBK
YPTB0370 3617536783
YPTB0373 3962439842
YPTB0375 4157242978
YPTB0376 4307144150
YPTB0377 4419745390
46251contig_0001762020t3c_6 55246231 EMBL GBK
t3c_7 62426457
t3c_10 70187746
t3c_18 1625616906
t3c_19 1693817207
t3c_20 1720918003
YPTB0337 2105022054
46172contig_0001859699YPTB3840 69017803 EMBL GBK
YPTB0044 3081131269
YPTB0047 3359033826
YPTB0055 4006540997
YPTB0070 5457455272
46344contig_0001959342YPTB2167 3188932470 EMBL GBK
YPTB2160 3882939470
YPTB2156 4441946485
YPTB2147 5293654105
YPTB2146 5411254423
YPTB2144 5570956311
46273contig_0002057942YPTB0604 63827671 EMBL GBK
YPTB0603 76758604
YPTB0599 1371814584
YPTB0598 1458115228
YPTB0583 3723538458
YPTB0577 4477244933
YPTB0576 4501245626
YPTB0574 4776048203
YPTB0573 4814848585
46163contig_0002157717YPTB0903 61146515 EMBL GBK
YPTB1795 1850419415
YPTB0920 2970031019
YPTB0925 3795838560
YPTB0930 4247244319
YPTB0933 4826648715
YPTB0934 4879449903
YPTB0936 5053550951
46257contig_0002257168YPTB3395 1825720152 EMBL GBK
YPTB3396 2018820769
YPTB3398 2166622091
YPTB3407 3063432064
YPTB3413 3971940078
YPTB3416 4249242707
46346contig_0002355367YPTB0616 83529290 EMBL GBK
YPTB0620 1313314086
YPTB0622 1448615307
YPTB0632 2420624583
YPTB0633 2459725415
YPTB0671 5232553422
46292contig_0002454240YPTB1025 1294713861 EMBL GBK
YPTB1027 1510715883
YPTB1029 1654617232
YPTB1034 2217922673
46198contig_0002553063YPTB2890 37834463 EMBL GBK
YPTB2889 44605371
YPTB2887 62606991
YPTB2886 69917371
YPTB2873 2657828200
YPTB2872 2821628554
YPTB2869 3318134434
YPTB2859 4156142790
YPTB2857 4332443647
YPTB2885 4633246667
YPTB2853 4666946869
46295contig_0002651276YPTB1330 2918930127 EMBL GBK
YPTB1316 3440134973
YPTB1309 4195442538
46237contig_0002749837YPTB3940 1793720351 EMBL GBK
YPTB3942 2162122721
YPTB3945 2482124961
YPTB3946 2498025339
YPTB3947 2530325560
YPTB3950 2905430253
YPTB3960 4563546411
YPTB3961 4651347400
46190contig_0002849010YPTB1119 1039011190 EMBL GBK
YPTB1116 1367914431
YPTB1110 2121722095
YPTB1106 2676927443
YPTB1105 2744328168
YPTB1104 2822228704
YPTB1103 2906231644
YPTB1098 3457935049
YPTB1097 3512437019
YPTB1096 3704238154
YPTB1091 4238943354
46296contig_0002946706YPTB0734 1084411299 EMBL GBK
YPTB0731 1397214451
YPTB0726 1880619576
YPTB0723 2155922095
YPTB0719 2540526199
YPTB0282 3634436712
YPTB0280 3763938343
YPTB0279 3834738775
YPTB0278 3895239497
YPTB0277 3949939882
46246contig_0003046091YPTB1149 31084274 EMBL GBK
YPTB1147 56388445
YPTB1146 87809496
YPTB1145 955111317
YPTB1144 1131811665
YPTB2915 2372723933
YPTB1125 4087541402
46321contig_0003144798x_1 1394215351 EMBL GBK
YPTB0028 1953719974
YPTB0033 3494437025
YPTB0037 4017540798
46239 contig_00032 43192
46204contig_0003342684YPTB1192 55475792 EMBL GBK
YPTB1209 72308336
YPTB1212 1135112337
46280contig_0003441547YPTB2354 80598724 EMBL GBK
YPTB2353 89119465
x_5 2320723458
YPTB2341 2805028400
YPTB2340 2849728694
YPTB2339 2873229088
YPTB2337 2951130494
YPTB2336 3050932896
46248contig_0003539580YPTB2640 933410098 EMBL GBK
YPTB2637 1320614516
YPTB2632 2022921314
YPTB2630 2216922975
46177contig_0003638840YPTB0685 1531816400 EMBL GBK
YPTB0690 2152922449
YPTB0692 2330524561
YPTB0693 2463425785
YPTB0701 3170932461
YPTB0703 3337234415
46241contig_0003738708YPTB0548 3058431459 EMBL GBK
46349contig_0003838441YPTB1524 1620117211 EMBL GBK
YPTB3230 1723218752
46343contig_0003938337YPTB2083 2765528650 EMBL GBK
YPTB2084 2899829411
YPTB2089 3365334204
YPTB2090 3456935615
46328contig_0004038283YPTB2799 10071819 EMBL GBK
YPTB2819 2704827386
46249contig_0004136035YPTB0950 51475761 EMBL GBK
YPTB0951 57517742
YPTB0955 1168712265
YPTB0958 1337114675
YPTB0959 1514815771
YPTB0960 1600017271
YPTB0962 2003820310
YPTB0963 2054122427
YPTB0966 2379224490
YPTB0970 2859029051
46301contig_0004235756YPTB2427 54476700 EMBL GBK
YPTB2432 989411264
YPTB2442 2110722309
YPTB2447 2709528399
YPTB2448 2881129353
46276contig_0004335321YPTB0532 53656459 EMBL GBK
YPTB0531 67408251
YPTB0530 83548803
YPTB0523 1725918308
46350contig_0004432797YPTB2838 1767418855 EMBL GBK
46279 contig_00045 32207
46178 contig_00046 31224
46220contig_0004730798YPTB0774 74548080 EMBL GBK
YPTB0768 1902219339
YPTB0765 2160722515
YPTB3743 2252623944
46330contig_0004830612YPTB3491 83159019 EMBL GBK
YPTB3488 1134411739
YPTB3485 1266412969
YPTB3479 1710418408
YPTB3478 1901420423
YPTB3476 2208823578
46203contig_0004930327YPTB0104 59996316 EMBL GBK
YPTB0101 68829080
YPTB0097 1234913680
YPTB0089 1550215741
YPTB0086 1730118824
46228contig_0005029655YPTB0994 30603665 EMBL GBK
YPTB0993 36653997
YPTB0990 68887268
YPTB0981 2297923122
YPTB0979 2709227460
46182contig_0005127851YPTB3791 14312024 EMBL GBK
46233contig_0005227295YPTB2116 64786774 EMBL GBK
46208contig_0005327098YPTB2549 1794518601 EMBL GBK
46281 contig_00054 26135
46196contig_0005524647YPTB0851 27475389 EMBL GBK
YPTB0857 1266313175
YPTB0858 1334713688
YPTB0873 1801119171
YPTB0876 2072521267
46271contig_0005622894YPTB1647 937210736 EMBL GBK
46211contig_0005722878YPTB0744 35963940 EMBL GBK
YPTB0747 62616962
YPTB0751 1454916783
46297 contig_00058 22691
46294 contig_00059 22421
46214contig_0006022378YPTB0713 1194614609 EMBL GBK
YPTB0712 1480615570
46308contig_0006122331YPTB2965 1590116365 EMBL GBK
YPTB2966 1638117100
YPTB2967 1729218047
46223contig_0006221346YPTB1537 53615942 EMBL GBK
YPTB1535 71578269
YPTB1531 1198713240
46253contig_0006321133YPTB1615 1523015616 EMBL GBK
x_3 1585515968
46338 contig_00064 19429
46185contig_0006519169YPTB3786 1090512893 EMBL GBK
46277contig_0006619149YPTB2137 1116311924 EMBL GBK
YPTB2139 1323913490
46334contig_0006719002YPTB3847 1526615856 EMBL GBK
46247 contig_00068 18989
46274 contig_00069 18816
46242contig_0007018494YPTB0296 48265416 EMBL GBK
46199 contig_00071 17928
46289 contig_00072 17280
46285contig_0007316989YPTB0121 56837083 EMBL GBK
46183contig_0007416462YPTB2895 11132069 EMBL GBK
YPTB2897 27503325
YPTB1141 90299607
YPTB1135 1382914323
46167contig_0007516238YPTB0132 67577095 EMBL GBK
YPTB0134 961411260
YPTB0137 1266014510
46266 contig_00076 15805
46304 contig_00077 15793
46217 contig_00078 15356
46298contig_0007914680YPTB2942 67368454 EMBL GBK
YPTB2940 939010076
46260contig_0008014431YPTB3965 23873757 EMBL GBK
YPTB3966 42444666
YPTB3969 70948635
YPTB3970 86509183
YPTB3971 91989668
YPTB3973 1014410968
46305contig_0008114143YPTB1940 992910456 EMBL GBK
46263contig_0008213893YPTB2609 17312417 EMBL GBK
YPTB2612 43875904
YPTB2613 59176426
YPTB2617 986610528
YPTB3790 1148512495
46210contig_0008313252YPTB0494 51936071 EMBL GBK
46291 contig_00084 13174
46226contig_0008512286YPTB1297 61916418 EMBL GBK
46176contig_0008611796t3c_1 79058537 EMBL GBK
46315 contig_00087 11570
46197contig_0008811211YPTB2389 33633596 EMBL GBK
46351 contig_00089 11074
46162 contig_00090 11032
46205 contig_00091 10556
46299contig_000929970YPTB2125 9811787 EMBL GBK
YPTB2126 17872977
46268contig_000939754YPTB1159 19503242 EMBL GBK
YPTB1157 46235051
YPTB1155 57506151
46171contig_000949705YPTB2973 10592090 EMBL GBK
YPTB2974 20832736
YPTB2975 28123627
YPTB2977 41794886
YPTB2978 51156833
46195 contig_00095 9085
46265 contig_00096 8850
46170 contig_00101 7997
46232 contig_00102 7897
46309 contig_00103 7854
46229contig_001047701YPTB0887 4191762 EMBL GBK
YPTB0889 29973797
YPTB0890 37904419
YPTB0892 50386261
YPTB0894 73497576
46272 contig_00105 7640
46339 contig_00106 7531
46224 contig_00107 6454
46278 contig_00108 6376
46225 contig_00113 5513
46207 contig_00114 5349
46287 contig_00115 4988
46269 contig_00116 4761
46188 contig_00117 4760
46219 contig_00118 4668
46302 contig_00119 4445
46318 contig_00120 4119
46230 contig_00121 4065
46335 contig_00122 3957
46189 contig_00123 3752
46333 contig_00124 3733
46218 contig_00109 3729
46184 contig_00125 3707
46320 contig_00126 3641
46326 contig_00111 3508
46180 contig_00127 3457
46324 contig_00128 3158
46245 contig_00129 2959
46213contig_001302922t3c_3 12642745 EMBL GBK
46314 contig_00131 2898
46316 contig_00132 2713
46286 contig_00133 2665
46306 contig_00134 2586
46240 contig_00135 2372
46325 contig_00136 2368
46175 contig_00137 2323
46347 contig_00138 2274
46238 contig_00097 2109
46244 contig_00139 2058
46201 contig_00112 1762
46216 contig_00100 1638
46187 contig_00140 1568
46168 contig_00110 1558
46310 contig_00098 1488
46194 contig_00142 1419
46200 contig_00143 1404
46311 contig_00099 1403
46191 contig_00144 1399
46284contig_001411273YPTB0002 6071068 EMBL GBK
46337 contig_00145 1197
46254 contig_00146 1100
46322 contig_00147 1082
46317 contig_00148 1061
46262 contig_00149 1057
46283 contig_00150 954
46209 contig_00151 929
46300 contig_00152 893
46235 contig_00153 892
46212 contig_00154 845
46222 contig_00155 843
46336 contig_00156 843
46181 contig_00157 822
46303 contig_00158 782
46186 contig_00159 746
46329 contig_00161 688
46252 contig_00162 676
46332 contig_00163 656
46313 contig_00164 651
46227 contig_00165 635
46331 contig_00166 634
46221 contig_00167 603
46243 contig_00168 603
46165 contig_00169 586
46261 contig_00171 547
46173 contig_00170 547
46166 contig_00160 538
46179 contig_00173 495
46255 contig_00174 484
46348 contig_00175 464
46319 contig_00176 464
46236 contig_00177 459
46234 contig_00178 459
46345 contig_00179 412
46250 contig_00180 410
46340 contig_00181 410
46193 contig_00182 407
46258 contig_00172 391
46270 contig_00183 389
46215 contig_00185 356
46231 contig_00187 353
46290 contig_00186 353
46312 contig_00189 317
46293 contig_00188 317
46164 contig_00190 281
46327 contig_00184 220