Full information on isolate 2020/00282 (id:9376)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 9376
- isolate
- 2020/00282
- alias
- IP43410
- species genotypic
- pseudotuberculosis
- genotype
- 12
- isolation date
- 25/02/2020
- sender
- Sylvie Brémont, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2020-03-09
- datestamp
- 2020-03-09
Sequence bin
- method
- Illumina
- contigs
- 138
- total length
- 4,610,219 bp
- max length
- 300,385 bp
- mean length
- 33,408 bp
- N50
- 95,644
- L50
- 16
- N90
- 29,097
- L90
- 49
- N95
- 18,450
- L95
- 59
- %GC
- 47.52
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,032
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1921 | 100 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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