Full information on isolate 2020/00224 (id:9319)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 9319
- isolate
- 2020/00224
- alias
- IP43355
- species genotypic
- pseudotuberculosis
- genotype
- 11
- isolation date
- 17/02/2020
- sender
- Sylvie Brémont, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2020-02-27
- datestamp
- 2020-02-27
Sequence bin
- method
- Illumina
- contigs
- 227
- total length
- 4,818,169 bp
- max length
- 201,999 bp
- mean length
- 21,226 bp
- N50
- 70,539
- L50
- 23
- N90
- 13,566
- L90
- 80
- N95
- 7,013
- L95
- 104
- %GC
- 47.45
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,993
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1918 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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