Full information on isolate IP31922 (id:9251)
Provenance/primary metadata
- id
- 9251
- isolate
- IP31922
- species genotypic
- pseudotuberculosis
- genotype
- 16
- sender
- Cyril Savin, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2020-02-17
- datestamp
- 2020-02-17
Sequence bin
- method
- Unknown
- contigs
- 127
- total length
- 4,605,144 bp
- max length
- 191,874 bp
- mean length
- 36,261 bp
- N50
- 88,634
- L50
- 19
- N90
- 34,794
- L90
- 50
- N95
- 21,270
- L95
- 58
- %GC
- 47.56
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,998
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1920 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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