Full information on isolate 2020/00148 (id:9207)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 9207
- isolate
- 2020/00148
- alias
- IP43278
- species genotypic
- pseudotuberculosis
- genotype
- 16
- isolation date
- 28/01/2020
- sender
- Sylvie Brémont, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2020-02-10
- datestamp
- 2020-02-17
Sequence bin
- method
- Illumina
- contigs
- 125
- total length
- 4,613,890 bp
- max length
- 361,367 bp
- mean length
- 36,912 bp
- N50
- 106,526
- L50
- 15
- N90
- 29,365
- L90
- 47
- N95
- 18,148
- L95
- 57
- %GC
- 47.50
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,997
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1919 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: