Full information on isolate IP32641 (id:8851)
Provenance/primary metadata
- id
- 8851
- isolate
- IP32641
- species genotypic
- pseudotuberculosis
- genotype
- 16
- sender
- Cyril Savin, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2020-01-02
- datestamp
- 2020-01-02
Sequence bin
- method
- Illumina
- contigs
- 145
- total length
- 4,651,301 bp
- max length
- 221,292 bp
- mean length
- 32,078 bp
- N50
- 66,691
- L50
- 24
- N90
- 19,779
- L90
- 69
- N95
- 12,669
- L95
- 83
- %GC
- 47.66
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,999
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1921 | 100 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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