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Full information on isolate IP32627 (id:8807)

Provenance/primary metadata

id: 8807
isolate: IP32627
species genotypic: pseudotuberculosis
genotype: 16
sender: Cyril Savin, Institut Pasteur, Paris, France
curator: Auto Tagger
update history: 7 updates show details
date entered: 2019-12-19
datestamp: 2019-12-19

Sequence bin

method: Unknown
contigs: 137
total length: 4,533,828 bp
max length: 235,270 bp
mean length: 33,094 bp
N50: 80,268
L50: 18
N90: 28,609
L90: 55
N95: 14,402
L95: 66
%GC: 47.53
Ns: 0
gaps: 0
loci tagged: 1,998

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
Yersinia cgMLST	500	500	100
Y.enterocolitica cgMLST	1727	500	28
Y.pseudotuberculosis cgMLST	1921	1920	99

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Yersinia pseudotuberculosis	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis	100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups Hide groups

Schemes and loci

All loci
- Typing
  - Genus
    - Yersinia cgMLST
    - Species
      - Y.enterocolitica cgMLST
      - Y.pseudotuberculosis cgMLST
- Other schemes
  - Virulence factors

Navigate and select schemes within tree to display allele designations

Tools

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Analysis: