Full information on isolate IP31871 (id:8764)
Provenance/primary metadata
- id
- 8764
- isolate
- IP31871
- species genotypic
- pseudotuberculosis
- genotype
- 16
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2019-12-16
- datestamp
- 2019-12-16
Sequence bin
- method
- Unknown
- contigs
- 151
- total length
- 4,667,022 bp
- max length
- 250,428 bp
- mean length
- 30,908 bp
- N50
- 78,602
- L50
- 18
- N90
- 24,717
- L90
- 55
- N95
- 15,061
- L95
- 67
- %GC
- 47.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,995
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 499 | 99 | |
| Y.enterocolitica cgMLST | 1727 | 499 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 1917 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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