Full information on isolate IP33433 (id:863)

Projects

This isolate is a member of the following project:

Public isolates
This project contains the isolates that should be publicly available through the public access database.

Provenance/primary metadata

id
863
isolate
IP33433
species phenotypic
pseudotuberculosis
serotype
I
species genotypic
pseudotuberculosis
genotype
2
isolation date
2006-03-02
category
Clinical
origin
Blood
comments
jusqu'au 12/05/2019 assignation: Y.pseudotuberculosis genotype 2
sender
Cyril Savin
curator
Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
update history
15 updates show details
date entered
2016-05-23
datestamp
2019-05-13

Sequence bin

method
Unknown
contigs
188
total length
4,712,272 bp
max length
116,065 bp
mean length
25,066 bp
N50
46,819
L50
32
N90
16,368
L90
98
N95
8,575
L95
118
%GC
47.73
Ns
0
gaps
0
loci tagged
2,027

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
Yersinia cgMLST500500100
Y.enterocolitica cgMLST172750028
Y.pseudotuberculosis cgMLST1921191999

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Yersinia pseudotuberculosis Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis 100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)

Schemes and loci

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Tools

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