Full information on isolate IP33029 (id:659)

Projects

This isolate is a member of the following project:

Public isolates
This project contains the isolates that should be publicly available through the public access database.

Provenance/primary metadata

id
659
isolate
IP33029
species phenotypic
pseudotuberculosis
serotype
I
species genotypic
pseudotuberculosis
genotype
2
isolation date
1995-02-09
origin
Stool
comments
jusqu'au 12/05/2019 assignation: Y.pseudotuberculosis genotype 2
sender
Cyril Savin
curator
Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
update history
13 updates show details
date entered
2016-05-23
datestamp
2019-05-13

Sequence bin

method
Unknown
contigs
115
total length
4,781,582 bp
max length
277,099 bp
mean length
41,579 bp
N50
144,117
L50
12
N90
30,074
L90
39
N95
23,711
L95
48
%GC
47.48
Ns
10466
gaps
117
loci tagged
2,026

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
Yersinia cgMLST500500100
Y.enterocolitica cgMLST172750028
Y.pseudotuberculosis cgMLST1921191999

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Yersinia pseudotuberculosis Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis 100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)

Schemes and loci

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Tools

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