Full information on isolate IP32996 (id:630)

Projects

This isolate is a member of the following project:

Public isolates
This project contains the isolates that should be publicly available through the public access database.

Provenance/primary metadata

id
630
isolate
IP32996
species phenotypic
pseudotuberculosis
serotype
I
species genotypic
pseudotuberculosis
genotype
2
isolation date
1993-02-02
origin
Blood
comments
jusqu'au 12/05/2019 assignation: Y.pseudotuberculosis genotype 2
sender
Cyril Savin
curator
Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
update history
13 updates show details
date entered
2016-05-23
datestamp
2019-05-13

Sequence bin

method
Unknown
contigs
140
total length
4,718,282 bp
max length
251,010 bp
mean length
33,703 bp
N50
123,533
L50
14
N90
30,158
L90
43
N95
19,892
L95
53
%GC
47.58
Ns
0
gaps
0
loci tagged
1,986

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
Yersinia cgMLST500500100
Y.enterocolitica cgMLST172750028
Y.pseudotuberculosis cgMLST1921192099

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Yersinia pseudotuberculosis Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis 100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: