Full information on isolate IP32943 (id:596)

Projects

This isolate is a member of the following project:

Public isolates
This project contains the isolates that should be publicly available through the public access database.

Provenance/primary metadata

id
596
isolate
IP32943
species phenotypic
pseudotuberculosis
serotype
I
species genotypic
pseudotuberculosis
genotype
2
isolation date
1990-02-08
category
Clinical
origin
Blood
comments
jusqu'au 12/05/2019 assignation: Y.pseudotuberculosis genotype 2
sender
Cyril Savin
curator
Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
update history
15 updates show details
date entered
2016-05-19
datestamp
2019-05-13

Sequence bin

method
Unknown
contigs
98
total length
4,793,510 bp
max length
423,444 bp
mean length
48,914 bp
N50
144,382
L50
11
N90
35,642
L90
34
N95
25,820
L95
42
%GC
47.51
Ns
4
gaps
1
loci tagged
2,028

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
Yersinia cgMLST500500100
Y.enterocolitica cgMLST172750028
Y.pseudotuberculosis cgMLST19211921100

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Yersinia pseudotuberculosis Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis 100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)
Y.pseudotuberculosis_5-mismatchY.pseudotuberculosis cgMLSTSingle-linkage5experimental83 (21 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: